Pairwise Alignments

Query, 498 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 450 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas fluorescens SBW25

 Score =  255 bits (651), Expect = 3e-72
 Identities = 162/456 (35%), Positives = 236/456 (51%), Gaps = 45/456 (9%)

Query: 33  LAVESLDIDAQGIARRPDGKVVFIEGALPFEQVSVNVHRKKNNWEAGTVTAIHRESSQRV 92
           L +E L  D +GI    +G+  F+ GAL  E V   V              + + S  R 
Sbjct: 29  LTIERLANDGRGIVFF-EGRTWFVNGALAGEDVEARVLGTHGKIVEARTERVFKSSELRR 87

Query: 93  RPGCPHFGLHAGACGGCKMQHLHEAAQVAVKQRVLEDNLWHLGKVRAETLMRPIEGPAWG 152
              C HFG     CGGC +QHL  A Q+A+KQR+L + L  +  V  +    P+ GP +G
Sbjct: 88  PAPCAHFG----RCGGCSVQHLPHAEQLALKQRMLAEQLSRVAGVEPQEWAAPLSGPEFG 143

Query: 153 YRHRARLSVRHVHKKGEVLIGFHERKSRYVADMQVCPVLPPHVSAMLMPLRELIFGMDAR 212
           YR RAR++VR   K   + +GF    S+ +  +  CPVL   +  ++  L  ++  +   
Sbjct: 144 YRRRARVAVRWDAKAKHLAVGFRAVASQDIVAIDDCPVLVQALQPIMQRLPNMLRRLSKP 203

Query: 213 ETCPQIELASGDDVTALVLRHLEPLSEDDLARLRAFGARHGVQWWLQAKG-PDTVKLLDE 271
           +    +E+ SG  + A++LRH+ PLSE DL  L+ F   H  Q WL  +G P+ V    +
Sbjct: 204 QALGHVEVFSGTSI-AVLLRHMAPLSEADLHILKEFCTFHDAQLWLHGEGQPEPV----D 258

Query: 272 GGEVLSYALPEFGITMPFKPTDFTQVNPFINRVLVVRALRLLDARADERVIDWFCGLGNF 331
              VL + L ++ + + ++P DF QVN  +N  +V +AL  L  + DERV+D FCGLGNF
Sbjct: 259 ADAVLGFRLEQWDLELAYRPGDFVQVNAGVNAAMVAQALEWLAPQPDERVLDLFCGLGNF 318

Query: 332 TLPIATTAGEVLGIEGSEALVARSRENLAGN--------QAGRDRPLAPTTFAARNLFEM 383
            LP+A    EV+ +EG + +V R+  N   N        QA   +PL    +A +    +
Sbjct: 319 ALPLARQVREVVAVEGVQTMVDRAAVNAVSNNLHNAQFFQADLSQPLTDAEWAKQGFSAV 378

Query: 384 TPELLVADGVAQKWLVDPPREGAFALAKAIADLHQNPALRGGWTPPQRIVYVSCNPATLA 443
                         L+DPPR+GA  + + +A L             +R+VYVSCNPATLA
Sbjct: 379 --------------LLDPPRDGALEVVRKLATL-----------KAKRLVYVSCNPATLA 413

Query: 444 RDAGLLVHQAGYRCVTAGVVNMFAHTAHVESMAVFE 479
           RD   LV Q GYR   AG+++MF  TAHVE+MA+FE
Sbjct: 414 RDTVELVKQ-GYRLKRAGILDMFPQTAHVEAMALFE 448