Pairwise Alignments

Query, 498 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 433 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  259 bits (661), Expect = 2e-73
 Identities = 167/446 (37%), Positives = 232/446 (52%), Gaps = 35/446 (7%)

Query: 33  LAVESLDIDAQGIARRPDGKVVFIEGALPFEQVSVNVHRKKNNWEAGTVTAIHRESSQRV 92
           ++V  LD   QG+AR  +GK +FI G LP E   V V   K  +    V     +S +R 
Sbjct: 19  VSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERE 77

Query: 93  RPGCPHFGLHAGACGGCKMQHLHEAAQVAVKQRVLEDNLWHLGKVRAETLMRPIEGPAWG 152
            P CPHFG+    CGGC+ QH    A V ++QR     L  L K     ++  +    WG
Sbjct: 78  TPRCPHFGV----CGGCQQQH----ASVDLQQRSKSAALARLMKHDVSEVIADVP---WG 126

Query: 153 YRHRARLSVRHVHKKGEVLIGFHERKSRYVADMQVCPVLPPHVSAMLMPLRELIFGMDAR 212
           YR RARLS+ ++ K  ++ +GF +  S  + D++ CP+L P + A+L  +R  +  + A 
Sbjct: 127 YRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAM 186

Query: 213 ETCPQIELASGDDVTALVLRHLEPLSEDDLARLRAFGARHGVQWWLQAKGPDTVKLLDEG 272
                +EL      T ++LRH  PLS  D  +L  F    G+  +L    PD+  L    
Sbjct: 187 RHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYL---APDSEILETVS 243

Query: 273 GEVLSYALPEFGITMPFKPTDFTQVNPFINRVLVVRALRLLDARADERVIDWFCGLGNFT 332
           GE+  Y     G+ + F P DF QVN  +N+ +V RAL  LD + ++RV+D FCG+GNFT
Sbjct: 244 GEMPWY--DSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFT 301

Query: 333 LPIATTAGEVLGIEGSEALVARSRENLAGNQAGRDRPLAPTTFAARNLFEMTPELLVADG 392
           LP+AT A  V+G+EG  ALV +      G Q  R   L   TF   NL E   +   A  
Sbjct: 302 LPLATQAASVVGVEGVPALVEK------GQQNARLNGLQNVTFYHENLEEDVTKQPWAKN 355

Query: 393 VAQKWLVDPPREGAFALAKAIADLHQNPALRGGWTPPQRIVYVSCNPATLARDAGLLVHQ 452
              K L+DP R GA  + + I  L            P RIVYVSCNPATLARD+  L+ +
Sbjct: 356 GFDKVLLDPARAGAAGVMQQIIKLE-----------PIRIVYVSCNPATLARDSEALL-K 403

Query: 453 AGYRCVTAGVVNMFAHTAHVESMAVF 478
           AGY      +++MF HT H+ESM +F
Sbjct: 404 AGYTIARLAMLDMFPHTGHLESMVLF 429