Pairwise Alignments

Query, 498 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 444 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Dickeya dianthicola ME23

 Score =  252 bits (643), Expect = 2e-71
 Identities = 169/459 (36%), Positives = 241/459 (52%), Gaps = 35/459 (7%)

Query: 26  RVLPEGWLAVESLDID--AQGIARRPDGKVVFIEGALPFEQVSVNVHRKKNNWEAGTVTA 83
           RV     L V + D+D   QG+AR   GK +FI G LP EQ  V +  +K  +    +  
Sbjct: 10  RVTTRQTLTVTANDLDPFGQGVARH-QGKTLFIPGVLPGEQAEVQLTEEKRQFAHARLRR 68

Query: 84  IHRESSQRVRPGCPHFGLHAGACGGCKMQHLHEAAQVAVKQRVLEDNLWH-LGKVRAETL 142
           +   S +RV P CPHF +    CGGC+ QH  +  Q   K   L   +    G V  E  
Sbjct: 69  LLTTSEERVTPRCPHFSV----CGGCQQQHASQPLQHRSKAAALTHLMTRETGAVPPEPE 124

Query: 143 MRPIEGPAWGYRHRARLSVRHVHKKGEVLIGFHERKSRYVADMQVCPVLPPHVSAMLMPL 202
           +  I   A+ YR RARL++ +  K   + +G+ +  S  + D+  CP+L P + A+L PL
Sbjct: 125 V--IAESAYAYRRRARLALYYQAKTHRLQMGYRQAGSHDLVDIAACPILCPELEALLAPL 182

Query: 203 RELIFGMDARETCPQIELASGDDVTALVLRHLEPLSEDDLARLRAFGARHGVQWWLQAKG 262
           R+ +  + A      +EL   +    +VLRHL+PL + D   L AF   HG   +     
Sbjct: 183 RDCLGQLQAVRRLGHVELVLAEQGPLVVLRHLDPLRDADRQALTAFAVLHGTALF---SA 239

Query: 263 PDTVKLLDEGGEVLSYALPEFGITMPFKPTDFTQVNPFINRVLVVRALRLLDARADERVI 322
           P+   L    G++ SY +   G+++ F P DF QVN  IN+ +V +AL  LD +  +RV+
Sbjct: 240 PEAGALECLHGDMPSYRIA--GLSLAFSPRDFIQVNDGINQRMVEQALTWLDPQPQDRVL 297

Query: 323 DWFCGLGNFTLPIATTAGEVLGIEGSEALVARSRENLAGNQAGRDRPLAPTTFAARNL-F 381
           D FCG+GNFTLP+A  AG V+G+EG  ALV + REN       R   L   TF   +L  
Sbjct: 298 DLFCGMGNFTLPLAVRAGSVVGVEGVAALVDKGREN------ARRNGLTQVTFYHHDLEA 351

Query: 382 EMTPELLVADGVAQKWLVDPPREGAFALAKAIADLHQNPALRGGWTPPQRIVYVSCNPAT 441
           ++T +   A G   K L+DP R GA  +   I  L            P+R+VY+SCNP T
Sbjct: 352 DVTLQPWAAMGF-DKILLDPARAGAPGVMPQIVKL-----------APRRVVYISCNPTT 399

Query: 442 LARDAGLLVHQAGYRCVTAGVVNMFAHTAHVESMAVFEL 480
           LARD+ +L+  AGYR     +++MF HT H+ESMA+F L
Sbjct: 400 LARDSNVLM-AAGYRLARLAMLDMFPHTGHLESMALFLL 437