Pairwise Alignments

Query, 498 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 456 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Dickeya dianthicola 67-19

 Score =  244 bits (622), Expect = 6e-69
 Identities = 169/471 (35%), Positives = 241/471 (51%), Gaps = 47/471 (9%)

Query: 26  RVLPEGWLAVESLDID--AQGIARRPDGKVVFIEGALPFEQVSVNVHRKKNNWEAGTVTA 83
           RV     L V + D+D   QG+AR   GK +FI G LP EQ  V +  +K  +    +  
Sbjct: 10  RVTTRQTLTVTANDLDPFGQGVARH-QGKTLFIPGVLPGEQAEVQLTEEKRQFAHARLRR 68

Query: 84  IHRESSQRVRPGCPHFGLHAGACGGCKMQHLHEAAQVAVKQRVLEDNLWH-LGKVRAETL 142
           +   S +RV P CPHF +    CGGC+ QH  +  Q   K   L   +    G V  E  
Sbjct: 69  LLTTSEERVTPRCPHFSV----CGGCQQQHASQPLQQRSKAAALTHLMTRETGAVPPEPE 124

Query: 143 MRPIEGPAWGYRHRARLSVRHVHKKG------------EVLIGFHERKSRYVADMQVCPV 190
           +  I   A+ YR RARL++ +  K               + +G+ +  S  + D+  CP+
Sbjct: 125 V--IAESAYAYRRRARLALYYQAKTQAKTQSKTQAKTHRLQMGYRQAGSHDLVDIAACPI 182

Query: 191 LPPHVSAMLMPLRELIFGMDARETCPQIELASGDDVTALVLRHLEPLSEDDLARLRAFGA 250
           L P + A+L PLR+ +  + A      +EL   +    +VLRHL+PL + D   L AF  
Sbjct: 183 LCPELEALLAPLRDCLGQLQAVRRLGHVELVLAEQGPLVVLRHLDPLRDADRQALTAFAV 242

Query: 251 RHGVQWWLQAKGPDTVKLLDEGGEVLSYALPEFGITMPFKPTDFTQVNPFINRVLVVRAL 310
            HG   +     P+   L    G++ SY +   G+++ F P DF QVN  IN+ +V +AL
Sbjct: 243 LHGTALF---SAPEAGALECLHGDMPSYRIA--GLSLAFSPRDFIQVNDGINQRMVEQAL 297

Query: 311 RLLDARADERVIDWFCGLGNFTLPIATTAGEVLGIEGSEALVARSRENLAGNQAGRDRPL 370
             LD +  +RV+D FCG+GNFTLP+A  AG V+G+EG  ALV + REN       R   L
Sbjct: 298 TWLDPQPQDRVLDLFCGMGNFTLPLAARAGSVVGVEGVAALVDKGREN------ARRNGL 351

Query: 371 APTTFAARNL-FEMTPELLVADGVAQKWLVDPPREGAFALAKAIADLHQNPALRGGWTPP 429
              TF   +L  ++T +   A G   K L+DP R GA  +   I  L            P
Sbjct: 352 TQVTFYHHDLEADVTRQPWAAMGF-DKILLDPARAGASGVMPQIVKL-----------AP 399

Query: 430 QRIVYVSCNPATLARDAGLLVHQAGYRCVTAGVVNMFAHTAHVESMAVFEL 480
           +R+VY+SCNP TLARD+ +L+  AGYR     +++MF HT H+ESMA+F L
Sbjct: 400 RRVVYISCNPTTLARDSKVLM-AAGYRLARLAMLDMFPHTGHLESMALFLL 449