Pairwise Alignments

Query, 496 a.a., RND efflux system, outer membrane lipoprotein CmeC from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 463 a.a., transporter from Pseudomonas simiae WCS417

 Score =  380 bits (976), Expect = e-110
 Identities = 220/478 (46%), Positives = 305/478 (63%), Gaps = 30/478 (6%)

Query: 26  LLAAAALSAC-SFIPKYERPEAPVASQFPGPQPAA-AADAKTGADVAWREFIGDAKLREL 83
           LLAA AL  C +  P+YERPEAPV+ Q+    PAA     K GAD+ W++F  D +L +L
Sbjct: 7   LLAAMALGGCVNLAPQYERPEAPVSEQW---LPAANLPKGKVGADIKWQQFFTDRRLAQL 63

Query: 84  IALALKNNRDLRVATLNIEQVRAQYQIRRADQFPTI--GLAATGNRQPDG--NGGIQST- 138
             LAL NNRDLR+A+LN+E+ +AQY+I+RAD FPT+  G++ T +R P    N G   T 
Sbjct: 64  QQLALANNRDLRLASLNVEKAQAQYRIKRADLFPTVDAGVSGTHSRTPGSLSNTGTAVTT 123

Query: 139 --YSVGLALSTWEIDFFGRLGALKEAALAQYLASEEARHAAQTSLVAAVASTWLSLQAND 196
             YS  L LS++E+D FGR+  L++ AL  YLA  E R + Q SLVA VA+ WL+L A++
Sbjct: 124 HDYSAQLGLSSYELDVFGRVRNLRDEALEDYLALTETRRSTQISLVAEVATAWLTLAADN 183

Query: 197 ELLVLTERTVATREDSLRLSKLRFDNGATSALDLRQAESLTAAAQSALAQQRRLRALDIN 256
           E L+L + T+ ++  +  L++  +  G +SAL + QA++   +A+  +A        D N
Sbjct: 184 ERLLLAQETLTSQLATYDLTQRSYALGGSSALSVAQAQTTVESARGDVASYESQILQDRN 243

Query: 257 ALTLLVGQAPPAELLPVPPTLPAPSANANQVVVPTAPVPAATMLREVPAGLPSDLLTRRP 316
           AL LLVG   P  LLP                     + +A +L ++PAGLPS LL +RP
Sbjct: 244 ALRLLVGSDLPEALLP------------------GTRLESAAVLVDIPAGLPSSLLQQRP 285

Query: 317 DIRQAEQQLIAANANIGAARAAFFPRISLTASAGTASSSLSGLFKDGSWGFTLAPQALLP 376
           D+  AE  L +AN +IGAARAAF+P ISLTA+AG++SS+L+GLFK GS  +T AP   +P
Sbjct: 286 DVLSAEHTLKSANIDIGAARAAFYPSISLTANAGSSSSALAGLFKSGSGAWTFAPSISVP 345

Query: 377 IFDAGRNRANLDSSNAGRDIAVAQYEKAIQTAFREVADALAGSATLGDQLSAQQLQATAE 436
           IFD G NRA LDS+   R+I +  Y++ +QTAFREVADALA  +TL  +++AQQ    A 
Sbjct: 346 IFDGGSNRATLDSAKVEREIQLQTYQQTLQTAFREVADALAVRSTLDRRIAAQQALTDAS 405

Query: 437 AERFRLAELRYRNGVASFLDVLDAQRSLFATQQALAQTRLAQQQNQVNLYKALGGGWS 494
            + F L++  YR G  S+L+ LDAQRSL++ QQ L   RL +Q N++ LYK LGGGW+
Sbjct: 406 RKSFELSDALYRGGSQSYLEALDAQRSLYSAQQDLITLRLTEQSNRITLYKVLGGGWN 463