Pairwise Alignments

Query, 1095 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 624 a.a., Sensory box histidine kinase from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  202 bits (513), Expect = 8e-56
 Identities = 135/391 (34%), Positives = 200/391 (51%), Gaps = 21/391 (5%)

Query: 707  MVRTFTDVSSYMQAQEALRDQRQRLAWVLEATRPGIWENNMVDNVLTVNERWAEMLGYTL 766
            ++    D+SS    ++ALR     L           W  ++V           E+LG   
Sbjct: 235  LIAVVQDISSRKATEDALRTSEHLLRQAHALAGLASWRADLVTGRFVTLAGSHEILGLPS 294

Query: 767  RELQPMRAETWEALVQPDDLKRADQIREQHIAGLLPYYECDIRMRHKAG---HWIWVNTR 823
             +     A+   AL  PDD  RA Q+ +  + G   Y+   I  R   G   HW  V   
Sbjct: 295  ADFS---AQDMIALTHPDDFPRALQLWKLAVQGKADYH---IEYRLLFGGEEHWFLVQAE 348

Query: 824  GRVHKRDAQDRALFMSGTHLDITERVAAQEQVKALNASLEQRVSARTAELERSMRDMEAI 883
                +RDAQ RA+   G   D+++R  A+ +++ LNASLEQR+  RT  L+ +  ++E+ 
Sbjct: 349  ---FQRDAQGRAVSALGVIQDVSKRKRAELEIQQLNASLEQRIHRRTEALKAAYDELESY 405

Query: 884  SYSIAHDLRAPLRSVNGFASIVLEDEADRLSPTGRDMFERIARSSRNMGQMITDMLELLR 943
            SY++AHDLR+PLR +NGFA  + ED    LS   +   +RI  +S+ MG++I  +L L +
Sbjct: 406  SYAVAHDLRSPLRIINGFAQALHEDNPG-LSSDSQSHLQRITAASKKMGELIDGLLTLSQ 464

Query: 944  VVRVDLEPVPVDMHALAQSVVEALSSQASQARIDIQAMP--PAMGDATLLRQVFSNLIDN 1001
              R +L+  PV + A+A  ++E  +    Q R+  Q  P    M D  L+  +  NL+ N
Sbjct: 465  FARGELQRKPVHLSAIAVRLLEEFAGAEPQRRVRWQIEPGLHVMADPALVEALMQNLLHN 524

Query: 1002 GLKYSRHLAQPELAVGFDSRQ----RAYFVRDNGMGFDMAHAEKLFGLFQRLHAGSNVPG 1057
              KY+ +   PE  +  +       + + V DNG GFDMA A KLF  FQRLH  +   G
Sbjct: 525  AWKYTAN--TPEALIRVEGEYLHGLQRFRVIDNGAGFDMARAAKLFQPFQRLHMPNEFSG 582

Query: 1058 MGVGLAIVSRIVERHGGRVWAESAPGEGATF 1088
            +G+GLA   RIV+RHGG + A + PG GATF
Sbjct: 583  LGIGLATSLRIVQRHGGELKASAEPGRGATF 613



 Score = 52.0 bits (123), Expect = 1e-10
 Identities = 33/146 (22%), Positives = 70/146 (47%), Gaps = 4/146 (2%)

Query: 719 QAQEALRDQRQRLAWVLEATRPGIWENNMVDNVLTVNERWAEMLGYTLRELQPMRAETWE 778
           +A E ++  +Q+L    E +  G+  N++    + +N+ + +++GYT  E   M  + + 
Sbjct: 120 EATEQIQQSQQQLEDTFEQSATGMAHNDLQGRWIRLNQTYCDIVGYTKEE---MLTKHFR 176

Query: 779 ALVQPDDLKRADQIREQHIAGLLPYYECDIRMRHKAGHWIWVNTRGRVHKRDAQDRALFM 838
               PDDL+   +  ++ +AG + +Y  + R  H+ GH +W +    +  R A     ++
Sbjct: 177 DFTHPDDLELDMRQLQRTLAGEIHHYSFEKRYIHRRGHIVWAHITISL-VRKASGEPDYL 235

Query: 839 SGTHLDITERVAAQEQVKALNASLEQ 864
                DI+ R A ++ ++     L Q
Sbjct: 236 IAVVQDISSRKATEDALRTSEHLLRQ 261



 Score = 43.5 bits (101), Expect = 5e-08
 Identities = 82/330 (24%), Positives = 124/330 (37%), Gaps = 45/330 (13%)

Query: 130 EATREFEATEALREANLGLQQQVELHAA-IEKLARVGHWTNAQHSDEVVWSLGLFDIAGM 188
           +A R  EATE ++++   L+   E  A  +      G W     +          DI G 
Sbjct: 114 QARRMREATEQIQQSQQQLEDTFEQSATGMAHNDLQGRWIRLNQT--------YCDIVGY 165

Query: 189 EPRDLIARAEGRSGIHPDDWE----------AWEAARQAMDGRQVEFRWRLPDGQQRWFR 238
              +++ +   R   HPDD E          A E    + + R +  R     G   W  
Sbjct: 166 TKEEMLTK-HFRDFTHPDDLELDMRQLQRTLAGEIHHYSFEKRYIHRR-----GHIVWAH 219

Query: 239 TRIGQTSVA-GNPQTDFGVVQDITAEREASERLAEQLKLLQNVAARVPGMMYQARLRADG 297
             I     A G P     VVQDI++ +   + L     LL+   A      ++A L    
Sbjct: 220 ITISLVRKASGEPDYLIAVVQDISSRKATEDALRTSEHLLRQAHALAGLASWRADLVTGR 279

Query: 298 SSTIPYVNDMVRTMLEIEPADLEQDTGILFRRVHPDDRAEVIAALAASAQRLMTLRLTYR 357
             T+   ++    +L +  AD      I     HPDD    +     + Q      + YR
Sbjct: 280 FVTLAGSHE----ILGLPSADFSAQDMIAL--THPDDFPRALQLWKLAVQGKADYHIEYR 333

Query: 358 VCLPTAGTRWHHVEAVPQREADG-SVLWHGFSTDVTE---ARLATQKL-----ERQHRLI 408
           + L      W  V+A  QR+A G +V   G   DV++   A L  Q+L     +R HR  
Sbjct: 334 L-LFGGEEHWFLVQAEFQRDAQGRAVSALGVIQDVSKRKRAELEIQQLNASLEQRIHRRT 392

Query: 409 EAVRLAQSVYIEAEDKRKAFEGLLQSLLSV 438
           EA++ A   Y E E    A    L+S L +
Sbjct: 393 EALKAA---YDELESYSYAVAHDLRSPLRI 419