Pairwise Alignments

Query, 1095 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 1264 a.a., Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  183 bits (465), Expect = 6e-50
 Identities = 98/256 (38%), Positives = 145/256 (56%), Gaps = 6/256 (2%)

Query: 844  DITERVAAQEQVKALNASLEQRVSARTAELERSMRDMEAISYSIAHDLRAPLRSVNGFAS 903
            D+T+     + ++ +N  LE RV  RT +L  + +D+E+ SYS++HDLR+PLR ++ F S
Sbjct: 989  DMTDAKRLDDLMRNINDELENRVVERTEQLLAANKDLESFSYSVSHDLRSPLRHISSFVS 1048

Query: 904  IVLEDEADRLSPTGRDMFERIARSSRNMGQMITDMLELLRVVRVDLEPVPVDMHALAQSV 963
            ++ E                I  S+R+M Q+I  +L   R+ R  +    VD   L  +V
Sbjct: 1049 LLEEHLGGNCDEVSARYLSTIGNSARHMSQLIDGLLAFSRLGRSAVNLTAVDFTLLVDAV 1108

Query: 964  VEALSSQASQARID---IQAMPPAMGDATLLRQVFSNLIDNGLKYSRHLAQPELAVGFDS 1020
            V  +        +D      +P   GDA LLR+V++NL+ N  KY+R   +  + VG+  
Sbjct: 1109 VNQIGHDTEGRVVDWVVAPDLPVVQGDALLLREVWANLLGNAYKYTRPRERTRIEVGWSM 1168

Query: 1021 RQ---RAYFVRDNGMGFDMAHAEKLFGLFQRLHAGSNVPGMGVGLAIVSRIVERHGGRVW 1077
                   +FVRDNG+GFD  +A+KLFG+FQRLH  S   G G+GLA+  RI+ERHGG +W
Sbjct: 1169 DPVVGYTFFVRDNGVGFDTKYAQKLFGVFQRLHRASEFEGTGIGLALTRRIIERHGGTIW 1228

Query: 1078 AESAPGEGATFWLRLP 1093
            AES  GEG+ F+  LP
Sbjct: 1229 AESQLGEGSVFYFSLP 1244



 Score = 45.1 bits (105), Expect = 3e-08
 Identities = 77/319 (24%), Positives = 122/319 (38%), Gaps = 41/319 (12%)

Query: 45  DGRLLAVNDAWLALTGLRREDVIG----RTTVELGHWSSAEERARFVSQSPSTETVQH-L 99
           +G  +++ND  L   G RRE+V+G    R  +   H    E R + + +  + E V++ +
Sbjct: 624 NGIYVSINDTELDWLGYRREEVVGKMAFRDMMAPRHSDLLERRMQKILKDDALEAVEYEM 683

Query: 100 RLRDGQMHRVRLHFTVIELSLEPL--ALVYMTEATREFEATEALREANLGLQQQVELHAA 157
           R RDG      L  + +  +      +   + + TR   A  ALR+    LQ   +    
Sbjct: 684 RRRDGSTFHALLSSSAVRDANGQFLRSNTTVVDITRRKAAEMALRDNQRFLQTITDHVPG 743

Query: 158 IEKLARVG---HWTNAQHSDEVVWSLGLFDIAGMEPRDLIARAEGRSGIHPDDWEAWE-A 213
           +      G    + NA+H            + GM+P+ +I R  G   + P+ W   E  
Sbjct: 744 LMAYLDAGLHFRFANAEH----------LRVYGMDPQYIIGRHIGEC-VAPEIWADIEPR 792

Query: 214 ARQAMDGRQVEFR-WR-LPDGQQRWF-RTRIGQTSVAGNPQTDFGVVQDIT--------- 261
            R A+ G+   F  WR   DGQQ +   + +   +  G  Q  F  + DIT         
Sbjct: 793 MRTALAGQPHHFETWRPTIDGQQIYVSASYLPDFNDEGTVQGLFVQIIDITDRKRIEERV 852

Query: 262 ------AEREASERLAEQLKLLQNVAARVPGMMYQARLRADGSSTIPYVNDMVRTMLEIE 315
                  E+  SER  E L+  Q     V  +        D    I    D  + M    
Sbjct: 853 IHLNEELEQRISERSLELLESEQRFRLMVDNLRDYCIFFMDAEGIITDWTDSAQRMDGYS 912

Query: 316 PAD-LEQDTGILFRRVHPD 333
           P   L +  G+LF   +PD
Sbjct: 913 PTQMLGRHYGVLFDPANPD 931



 Score = 37.7 bits (86), Expect = 6e-06
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 7/61 (11%)

Query: 830 DAQDRALFMSGTHLDITERVAAQEQVKALNASLEQRVSARTAEL-------ERSMRDMEA 882
           DAQ+R + +     DIT     QE+++  NA LE RV  RT EL        +++RD +A
Sbjct: 292 DAQNRPVMLLAVSRDITALHRQQEEIQHFNAELEDRVRQRTDELAEAKERIHQALRDAQA 351

Query: 883 I 883
           +
Sbjct: 352 L 352



 Score = 34.7 bits (78), Expect = 5e-05
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 294 RADGSSTIPYVNDMVRTMLEIEPADLEQDTGILFRRVHPDDRAEVIAALAASAQRLMTLR 353
           R D +  + +V++ ++ +  ++  D      +   RVHPDD   V      +     TL 
Sbjct: 85  RTDHAGVLTHVDEKLQAIFALQKQDFPNFGWL--SRVHPDDLERVQQHWFRAISEAETLS 142

Query: 354 LTYRVCLPTAGTRWHHVEAVPQREADGSVLWH-GFSTDVTEAR 395
           + +R+  P        V   P R+A+G+V+   GF  D+T  R
Sbjct: 143 VEFRLVRPGDEIVHVLVRNAPLRDANGAVVSQLGFMQDITPMR 185



 Score = 33.9 bits (76), Expect = 8e-05
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 843 LDITERVAAQEQVKALNASLEQRVSARTAELERS 876
           +DIT+R   +E+V  LN  LEQR+S R+ EL  S
Sbjct: 840 IDITDRKRIEERVIHLNEELEQRISERSLELLES 873