Pairwise Alignments

Query, 395 a.a., ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 362 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 78.6 bits (192), Expect = 3e-19
 Identities = 80/320 (25%), Positives = 131/320 (40%), Gaps = 34/320 (10%)

Query: 33  SALKKLGKGEGQVDIVAWAGYIERGQTDKNFDWVTDFEKKTSCK--VNVKTAGTSDEMVA 90
           +A     +    V +  W  YI  G+T      + DF+ KT  K   +V  +  + E   
Sbjct: 14  AAFSSASQAAPTVSVYNWTDYI--GETT-----LADFQAKTGIKPIYDVFDSNETLEGKL 66

Query: 91  LMNEGGFDLVTASGDASMRLIAGKRVQPVNVDLIPSYKTVDPRLQKAPWHYVNNTHYGTP 150
           L    G+D+V  S     R +       ++   +P++K +DP+L K          +  P
Sbjct: 67  LAGRTGYDVVVPSNHFLARQVKAGAFLKLDRAQLPNFKNLDPKLLKLLEKNDPGNAHSVP 126

Query: 151 YQWGWNVLMYNTTVFKD----KPPTSWNVVFEETTLPDGKSNKGRVQAFDGPIYIADAAL 206
           Y WG N + YN    K+        SW V+FE   +   K N+  V   D    +  A L
Sbjct: 127 YLWGTNGIGYNVDKVKEVLGIDAIDSWAVLFEPENIK--KLNQCGVAFLDSADELFPAIL 184

Query: 207 YLMKKNPALGIKDPYELNEAQYKAALDLLRGQRKLVGKYWHDAFVQIDDFTNEGVVASSS 266
             M K       DP   N   YK A   L   R  +  Y+H +   I D  N  +  +  
Sbjct: 185 NYMGK-------DPRSENPEDYKQAEAKLLTLRPYI-TYFHSS-KYISDLANGNICVA-- 233

Query: 267 WQFMANILKSKNRP--------VATVVPAEGATGWADTTMLHADAKHPNCAYMWMEHSLN 318
           + +  ++ ++ NR         +A  +P EG+  W D   + ADA HP  A+ ++ + L+
Sbjct: 234 FGYSGDVFQAANRAKEAKNGVKIAYSIPKEGSNLWFDLLAIPADASHPKEAHAFINYLLD 293

Query: 319 TKLQGDLAAWFGSVPSVPAA 338
            ++   ++A  G   + PAA
Sbjct: 294 PQVIAKVSASVGYANANPAA 313