Pairwise Alignments

Query, 395 a.a., ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 365 a.a., spermidine/putrescine ABC transporter - periplasmic subunit from Pseudomonas putida KT2440

 Score = 72.8 bits (177), Expect = 1e-17
 Identities = 82/326 (25%), Positives = 139/326 (42%), Gaps = 46/326 (14%)

Query: 16  LTTALTLATLAPAAQAQSALKKLGKGEGQVDIVAWAGYIERGQTDKNFDWVTDFEKKTSC 75
           L  A  +  +A A QA+  +         +++  W+ YI         D +  FEK+T  
Sbjct: 8   LLAAALMGAMASAVQAEDKV---------LNVYNWSDYIAP-------DTIAKFEKQTGI 51

Query: 76  KVNVKTAGTSDEMVA--LMNEGGFDLVTASGDASMRLIAGKRVQPVNVDLIPSYKTVDPR 133
           KV      +++ + A  L  + G+D+V  S +   + I     + ++   +P++K +DP 
Sbjct: 52  KVKYDVFDSNETLEAKLLAGKSGYDIVVPSNNFLAKQIKAGVYEELDRSKLPNWKNLDPD 111

Query: 134 LQKAPWHYVNNTH-YGTPYQWGWNVLMYNTTVFK-----DKPPTSWNVVFEETTLPDGKS 187
           L KA     +  + +  PY WG   + YN    K     DK   SW+VVF+   +   KS
Sbjct: 112 LLKAVGDASDKDNKHAFPYMWGSIGIGYNPEKVKAALGVDKID-SWDVVFKPENIAKLKS 170

Query: 188 NKGRVQAFDGPIYIADAALYLMKKNPALGIKDPYELNEAQYKAALDLLRGQRKLVGKYWH 247
               V   D P  +  AAL+ + K P    K      +   KAA DL    R  +  Y+H
Sbjct: 171 CG--VSFLDAPTEMLPAALHYLGK-PTDSTK------KEDLKAAEDLFLKIRPSI-TYFH 220

Query: 248 DAFVQIDDFTNEGVVASSSWQFMANILKSKNRP--------VATVVPAEGATGWADTTML 299
            +   I D  N  +  +  +    ++ +SK R         V  V+P EGA  + D   +
Sbjct: 221 SS-KYIGDMANGNICVAVGYS--GDLEQSKARAHEAGDKVKVDYVIPKEGAGTFYDMVAI 277

Query: 300 HADAKHPNCAYMWMEHSLNTKLQGDL 325
             DA+H + AY +M   +  ++  ++
Sbjct: 278 PKDAEHKDAAYEFMNFLMQPEIMAEI 303