Pairwise Alignments

Query, 395 a.a., ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 369 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score = 70.5 bits (171), Expect = 8e-17
 Identities = 73/291 (25%), Positives = 115/291 (39%), Gaps = 33/291 (11%)

Query: 45  VDIVAWAGYIERGQTDKNFDWVTDFEKKTSCKVNVKTAGTSDEMVALMNEG--GFDLVTA 102
           V I  W  YI           V DF+K+    V       S+ M + +  G  G+D+V A
Sbjct: 32  VHIYNWYDYIAPNT-------VKDFQKEAGVSVVYDVFDNSEVMQSKLMAGRSGYDVVVA 84

Query: 103 SGDASMRLIAGKRVQPVNVDLIPSYKTVDPRLQKAPWHYVNNTHYGTPYQWGWNVLMYNT 162
           S D    LI    ++ ++   +P++  +DP +            Y  PY WG   + Y+ 
Sbjct: 85  SADLLPNLIKAGVLKRLDRSKLPNWSHLDPDVLAKLQSNDPGNSYAAPYLWGTTGIGYDA 144

Query: 163 TVFK-----DKPPTSWNVVFEETTLPDGKSNKGRVQAFDGPIYIADAALYLMKKNPALGI 217
              K     D P  SW+++F+E  L   K  +  V   D P  +   AL+       LG+
Sbjct: 145 DKVKSLLGPDAPVNSWDLIFKEENL--AKLRQCGVAMLDAPGEVIPIALHY------LGL 196

Query: 218 KDPYEL-NEAQYKAALDLLRGQRKLVGKYWHDAFVQIDDFTNEGVVASSSW------QFM 270
             PY   N   YK A +LL   R  +  +    F  I D  N  V     W         
Sbjct: 197 --PYNSHNPDDYKKAQELLLKLRPHIAYFDSSRF--ISDLANGNVCVVLGWAGGVSDAQK 252

Query: 271 ANILKSKNRPVATVVPAEGATGWADTTMLHADAKHPNCAYMWMEHSLNTKL 321
           A+ L   +R +   +P EGA  W ++ +   DA +P     ++ + L  ++
Sbjct: 253 ASELAGNHRNLVYSIPREGAPVWVESMVQLNDAPNPEQGLAFINYMLRPEV 303