Pairwise Alignments

Query, 395 a.a., ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 362 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score = 65.5 bits (158), Expect = 2e-15
 Identities = 77/308 (25%), Positives = 122/308 (39%), Gaps = 34/308 (11%)

Query: 45  VDIVAWAGYIERGQTDKNFDWVTDFEKKTSCKV--NVKTAGTSDEMVALMNEGGFDLVTA 102
           V +  W  YI  G T      + DF+  +  KV  +V  +  + E   L    G+D+V  
Sbjct: 26  VSVYNWTDYI--GDTT-----LADFQASSGIKVVYDVFDSNETLEGKLLAGRTGYDVVVP 78

Query: 103 SGDASMRLIAGKRVQPVNVDLIPSYKTVDPRLQKAPWHYVNNTHYGTPYQWGWNVLMYNT 162
           S     R        P++   +P+++ +DP+L K          Y  PY WG N + YN 
Sbjct: 79  SNHFLARQAQAGAFLPLDRSKLPNWQHLDPKLLKQLEQNDPGNQYAVPYLWGTNGIGYNV 138

Query: 163 TVFKDKPPT----SWNVVFEETTLPDGKSNKGRVQAFDGPIYIADAALYLMKKNPALGIK 218
              K         SW V+FE   L   K  +  V   D P  +  A L        LG+ 
Sbjct: 139 DKVKAALGVDHIDSWAVLFEPENLK--KLKQCGVAFMDSPDELFPAVLNY------LGM- 189

Query: 219 DPYELNEAQYKAALDLLRGQRKLVGKYWHDAFVQIDDFTNEGVVASSSWQFMANILKSKN 278
           DP       Y  A   L   R  +  Y+H +   + D  N  V    ++ +  ++ ++ N
Sbjct: 190 DPRSEKPGDYAKAEARLLELRPYI-TYFHSS-KYVSDLANGDVCI--AFGYSGDVFQAAN 245

Query: 279 R--------PVATVVPAEGATGWADTTMLHADAKHPNCAYMWMEHSLNTKLQGDLAAWFG 330
           R         VA  +P EG+  W D   +  DA +P  A  ++ + L+ K+   ++A  G
Sbjct: 246 RAVEAKNGVKVAYSIPKEGSNLWFDLLAIPKDANNPEQALAFINYLLDPKVIAKVSATVG 305

Query: 331 SVPSVPAA 338
              + P A
Sbjct: 306 YANANPDA 313