Pairwise Alignments

Query, 395 a.a., ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 362 a.a., Putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score = 63.9 bits (154), Expect = 7e-15
 Identities = 68/282 (24%), Positives = 111/282 (39%), Gaps = 34/282 (12%)

Query: 42  EGQVDIVAWAGYIERGQTDKNFDWVTDFEKKTSCKVNVKTAGTSD--EMVALMNEGGFDL 99
           E  V++ +WA Y+      +       FE++T  KV   T  T +  E   L    G+D+
Sbjct: 23  EKVVNLYSWADYVAPQTLQR-------FEQETGYKVRYDTFDTPEVLETKLLTGGSGYDV 75

Query: 100 VTASGDASMRLIAGKRVQPVNVDLIPSYKTVDPRLQKAPWHYVNNTHYGTPYQWGWNVLM 159
           V  S     R +    +QP++   +P Y  +D  L            +  PY WG   L 
Sbjct: 76  VVPSSTVLARALKAHALQPLDAQAMPGYGNLDKDLLGKLAEVDPGNRHAVPYTWGTLGLG 135

Query: 160 YNTTVFK----DKPPTSWNVVFEETTLPDGKSN-KG-RVQAFDGPIYIADAALYLMKKNP 213
            N    +    D P  S +++F+    P+  +  KG  +   D P  +   AL  +    
Sbjct: 136 VNVEAVRQRLGDVPLDSLDLLFK----PEYATRLKGCGIALPDSPQEVIGVALNYLG--- 188

Query: 214 ALGIKDPYELNEAQYKAALDLLRGQRKLVGKYWHDAFVQIDDFTNEGVVASSSWQ----F 269
               KDPY  N+    AA +LL   +  +    +    QI+D  N  V  + ++      
Sbjct: 189 ----KDPYSQNKDDLAAAQNLLSQLQPSISYVANGR--QINDLANGSVCLALTYNGDAAM 242

Query: 270 MANILKSKNRPVATV--VPAEGATGWADTTMLHADAKHPNCA 309
            A+  +   +P   +  +P EG   W D  ++  DA HP  A
Sbjct: 243 AADQARRAGKPFEVIYRIPREGTLVWQDNLVIPKDAPHPEAA 284