Pairwise Alignments

Query, 395 a.a., ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 359 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score = 70.1 bits (170), Expect = 1e-16
 Identities = 79/318 (24%), Positives = 128/318 (40%), Gaps = 38/318 (11%)

Query: 22  LATLAPAAQAQSALKKLGKGEGQVDIVAWAGYIERGQTDKNFDWVTDFEKKTSCKVNVKT 81
           LA L  AA   SA +        V I  W+ Y+    T KNF   +          +V  
Sbjct: 6   LAPLMLAASVASAAET-------VKIYNWSSYVAP-DTLKNFQQASGIVPT----YDVYD 53

Query: 82  AGTSDEMVALMNEGGFDLVTASGDASMRLIAGKRVQPVNVDLIPSYKTVDPRLQKAPWHY 141
           +  + +   +    G+D+V  S     R I GK ++ ++   +P++  ++P L KA    
Sbjct: 54  SNETLDGKLMTGNSGYDVVFPSNHFMARQIQGKALKRLDKSKLPNWHNLNPVLLKALEVN 113

Query: 142 VNNTHYGTPYQWGWNVLMYNTTVFK-----DKPPTSWNVVFEETTLPDGKSNKGRVQAFD 196
                YG PY WG   + YN    K     + P  SW+++F+   +   KS  G     +
Sbjct: 114 DPGNQYGFPYLWGSTGIGYNIDKVKAVLGDNAPVDSWDLIFKPEYMSKLKSC-GVAVLDN 172

Query: 197 GPIYIADAALYLMKKNPALGIKDPYELNEAQYKAALDLLRGQRKLVGKYWHDAFVQIDDF 256
           GP  +  A  YL   + +   KD        Y+ A DLL   R  +  Y+H +     D 
Sbjct: 173 GPELLPIALHYLGLPHHSQDPKD--------YEKAKDLLMKVRPYIS-YFHSS-KYTGDL 222

Query: 257 TNEGVVASSSWQFMANILKSKNRP--------VATVVPAEGATGWADTTMLHADAKHPNC 308
            N  +       F  ++L++KNR         V   +P EGA  W D   +  DA     
Sbjct: 223 ANGDICVVVG--FSGDVLQAKNRADEANNGVKVGYSIPKEGAPMWFDMVAMPVDAPDEKA 280

Query: 309 AYMWMEHSLNTKLQGDLA 326
            Y +M + L  ++  +++
Sbjct: 281 GYAYMNYLLQPEVMANIS 298