Pairwise Alignments

Query, 1040 a.a., Excinuclease ABC subunit A from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 940 a.a., excinuclease ABC subunit UvrA from Escherichia coli ECRC100

 Score = 1255 bits (3247), Expect = 0.0
 Identities = 628/996 (63%), Positives = 769/996 (77%), Gaps = 60/996 (6%)

Query: 44   LSVRGARTHNLKNIDLDIPKHALVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 103
            + VRGARTHNLKNI+L IP+  L+V+TGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ
Sbjct: 4    IEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63

Query: 104  FLQLMDKPDVDLIEGLSPAIAIEQKATSHNPRSTVGTVTEIHDYLRLLFARAGTPHCPDH 163
            FL LM+KPDVD IEGLSPAI+IEQK+TSHNPRSTVGT+TEIHDYLRLL+AR G P CPDH
Sbjct: 64   FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYARVGEPRCPDH 123

Query: 164  HLPLTSQSVAQMVDTVLALPEGTRLMILAPVAREKKGEFTELFADMQAQGYVRFRVDGAV 223
             +PL +Q+V+QMVD VL+ PEG RLM+LAP+ +E+KGE T+   ++ +QGY+R R+DG V
Sbjct: 124  DVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARIDGEV 183

Query: 224  LEAEALPALKKTEKHNIDVVIDRIKVRADGEEEGVNPLRQRLAESFEAALRLADGRAIAV 283
             +    P L+  +KH I+VV+DR KVR D        L QRLAESFE AL L+ G A+  
Sbjct: 184  CDLSDPPKLELQKKHTIEVVVDRFKVRDD--------LTQRLAESFETALELSGGTAVVA 235

Query: 284  EMDAAEAGAAPREHGFSARFACPLCHYTVGELEPRLFSFNSPMGACPTCDGLGHTEFFDP 343
            +MD  +A     E  FSA FACP+C Y++ ELEPRLFSFN+P GACPTCDGLG  ++FDP
Sbjct: 236  DMDDPKA----EELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDP 291

Query: 344  ARVVAFPSLSLASGAIKGWDRRNGYYFAMIESLAAHYRFNAEAPWESLPDAVQQVLLYGS 403
             RV+  P LSLA GAI+GWDRRN YYF M++SLA HY+F+ EAPW SL   V +V+LYGS
Sbjct: 292  DRVIQNPELSLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGS 351

Query: 404  GEDEVKFSYALESGERAGKKVSKKHPFEGIVRNFERRYRETDSAAVREELARYRAVQACP 463
            G++ ++F Y  + G+ +     ++HPFEG++ N ERRY+ET+S+AVREELA++ + + C 
Sbjct: 352  GKENIEFKYMNDRGDTS----IRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCA 407

Query: 464  ECAGSRLRREARHVFVGEGEQKQPIYKISHVTLGEALAYFQKLELHGAKGDIAARVINEI 523
             C G+RLRREARHV+V    +  P+  IS +++G A+ +F  L+L G +  IA +++ EI
Sbjct: 408  SCEGTRLRREARHVYV----ENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEI 463

Query: 524  RQRLKFLNDVGLNYLSLDRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRD 583
              RLKFL +VGLNYL+L RSAETLSGGEAQRIRLASQIG+GL GVMYVLDEPSIGLHQRD
Sbjct: 464  GDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRD 523

Query: 584  NDRLIATLQHLRDLGNTVLVVEHDEDMIRTADHVIDMGPGAGVHGGRVMAQGTCEQVMAT 643
            N+RL+ TL HLRDLGNTV+VVEHDED IR ADHVID+GPGAG HGG V+A+G  E +MA 
Sbjct: 524  NERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGEHGGEVVAEGPLEAIMAV 583

Query: 644  PDSLTGQYLGGTRQIAVPARRTPWLPVVKKGEAPKAAPTKPRFPPSPAAERRAAREAAHQ 703
            P+SLTGQY+ G R+I VP +R P            A P K                    
Sbjct: 584  PESLTGQYMSGKRKIEVPKKRVP------------ANPEKV------------------- 612

Query: 704  ATLGELQEIRVVNARGHNLKGASVAFPVGLLTCVTGVSGSGKSTLVNDTLYAAVARTLYR 763
                    +++  ARG+NLK  ++  PVGL TC+TGVSGSGKSTL+NDTL+    R L  
Sbjct: 613  --------LKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNG 664

Query: 764  SH-DEPAAHDAIEGIEHFDKVINVDQSPIGRTPRSNPATYTGLFTGIRELMAEMPTARER 822
            +   EPA +  I+G+EHFDKVI++DQSPIGRTPRSNPATYTG+FT +REL A +P +R R
Sbjct: 665  ATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPESRAR 724

Query: 823  GYGPGRFSFNVAGGRCEACQGDGVVKVEMHFLPDVYVPCEVCHGQRYNRETLDVQYKGRN 882
            GY PGRFSFNV GGRCEACQGDGV+KVEMHFLPD+YVPC+ C G+RYNRETL+++YKG+ 
Sbjct: 725  GYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKT 784

Query: 883  IAQILDMTVEQSHAFFSAVPTLHRKLQTLLDVGLSYIQLGQSATTLSGGEAQRVKLALEL 942
            I ++LDMT+E++  FF AVP L RKLQTL+DVGL+YI+LGQSATTLSGGEAQRVKLA EL
Sbjct: 785  IHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLAREL 844

Query: 943  SKRDTGRTLYILDEPTTGLHFADIELLLKVLHQLRDAGNTIVVIEHNLDVIKTADWVIDM 1002
            SKR TG+TLYILDEPTTGLHFADI+ LL VLH+LRD GNTIVVIEHNLDVIKTADW++D+
Sbjct: 845  SKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADWIVDL 904

Query: 1003 GPEGGSGGGTVVAQGTPETIAAHPDSHTGRYLRRLL 1038
            GPEGGSGGG ++  GTPET+A    SHT R+L+ +L
Sbjct: 905  GPEGGSGGGEILVSGTPETVAECEASHTARFLKPML 940



 Score = 60.1 bits (144), Expect = 7e-13
 Identities = 41/119 (34%), Positives = 55/119 (46%), Gaps = 7/119 (5%)

Query: 709 LQEIRVVNARGHNLKGASVAFPVGLLTCVTGVSGSGKSTLVNDTLYAAVARTLYRSHDEP 768
           + +I V  AR HNLK  ++  P   L  VTG+SGSGKS+L  DTLYA   R    S    
Sbjct: 1   MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 769 AAH-------DAIEGIEHFDKVINVDQSPIGRTPRSNPATYTGLFTGIRELMAEMPTAR 820
           A           ++ IE     I+++Q      PRS   T T +   +R L A +   R
Sbjct: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYARVGEPR 119