Pairwise Alignments

Query, 980 a.a., DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 635 a.a., DNA topoisomerase III, bacteria and conjugative plasmid from Enterobacter asburiae PDN3

 Score =  269 bits (688), Expect = 4e-76
 Identities = 198/654 (30%), Positives = 317/654 (48%), Gaps = 47/654 (7%)

Query: 4   LVIAEKPSVAQDIVRALTPVAGKFDKHDDHFEN--DKYVVTSAVGHLVEIAAPEQFDVKR 61
           L IAEKPS+A    RA+  V  K  +  D F    +  VVT  +GHL+E A P+ +D + 
Sbjct: 3   LFIAEKPSLA----RAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDVYDSRY 58

Query: 62  GKWSFAHLPVLPPYFELKPIDKTKSRLGAVVKLVKRKDVTRLINACDAGREGELIFRLIE 121
            +W+   LP++P  + L+P      +L  + + +   +   +++A D  REG+L+   + 
Sbjct: 59  ARWNLNDLPIVPEKWRLQPRPSVTKQLNVIKRFLH--EAAEIVHAGDPDREGQLLVDEVL 116

Query: 122 QYAGGLKNGSYQSLGKPVQRLWLQSMTPAAIRDGFEQLRSDEQMRGLADAARSRSEADWM 181
            Y         Q     VQR  +  + P A+     +LR++ +   L  +A +R+ ADW+
Sbjct: 117 DYLELAPEKRQQ-----VQRCLINDLNPQAVERAISRLRANSEFIPLCVSALARARADWL 171

Query: 182 VGINGTRAMTAFNSRDGGFFLTTVGRVQTPTLSIVVEREEKIRAHRSRDYWEIHASFLAE 241
            GIN TRA T      G   + +VGRVQTP L +VV R+E I    ++D++E+ A  +  
Sbjct: 172 YGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEDIENFVAKDFFEVKAHIVTP 231

Query: 242 AGE-YPGKWFDPNFKKPTGDDADAELRADRVWSQREALAIAEAVRGKAASVKE-ESKPTT 299
             E +   W      +P+      +    R+  +  A  +   + G+ A V     K  +
Sbjct: 232 KDERFTAVW------QPSDACESYQDEEGRLLHRPLADHVVNRITGQPAIVTSYNDKRES 285

Query: 300 QASGLLYDLTSLQREANGRFGFSAKTTLQLAQSLYERHKALTYPRTDSRALPEDYLPTVK 359
           + + L + L++LQ EA  +FG SA+  L + Q LYE HK +TYPR+DSR LPE++     
Sbjct: 286 EPAPLPFSLSALQIEAAKKFGLSAQNVLDICQKLYETHKLITYPRSDSRYLPEEH----- 340

Query: 360 QTFDMLAG--SGMKHLAPHAKTAIDNGYIRPS--KRIFDNSKVSDHFAIIPTLQAPS-GL 414
                 AG  S M  +  HA   +    + P    R +D+ KV  H AIIPT +A S  L
Sbjct: 341 -----FAGRHSVMNAIGVHAPDLLPQPAVNPDTHNRCWDDKKVDAHHAIIPTARASSVNL 395

Query: 415 SEAEQKLYDLVVRRFLAVFFPSAEFMVTTRITSSVGHHFKTEGKVLVKPGWMAVYGKEAA 474
           ++ E K+Y+L+ R++L  F P A F             F  + + L + GW  + G +  
Sbjct: 396 TDNEAKVYNLIARQYLMQFCPDAVFRKCVIELEIAKGKFVAKARFLAEAGWRTLLGNK-- 453

Query: 475 EDVVDAKEGDKGQNLVPVREGETVRTETVEPKGLKTKPPARYSEATLLGAMEGAGKLVDD 534
               +  E + G  L  V + + +  E  E    +T+PP  +++ATLL AM G  + V D
Sbjct: 454 ----ERDEENDGTPLPVVAKDDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQD 509

Query: 535 DELREAMQ-EKGLGTPATRAAIIEGLLTEKYILREGREIIPTAKAFQLMTLLRGLGVEEL 593
            +L++ ++   GLGT ATRA IIE L    ++ ++GR I  T     L+  L  L     
Sbjct: 510 KDLKKILRATDGLGTEATRAGIIELLFKRGFLEKKGRYIHSTEPGRALIHSLPELA---- 565

Query: 594 SKPELTGEWEYKLAQMEHGQLSRAAFMGEIAAMTERMVKKAKEYDRDTIPGNYA 647
           ++P++T  WE  L Q+   Q     FM  +     +++ +A+     T  G  A
Sbjct: 566 ARPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIDQARSTPVKTFRGMVA 619