Pairwise Alignments

Query, 980 a.a., DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 699 a.a., type IA DNA topoisomerase from Phocaeicola dorei CL03T12C01

 Score =  341 bits (875), Expect = 9e-98
 Identities = 246/733 (33%), Positives = 375/733 (51%), Gaps = 71/733 (9%)

Query: 4   LVIAEKPSVAQDIVRALTPVAGKFDKHDDHFENDKYVVTSAVGHLVEIAAPEQFDVKRGK 63
           ++IAEKPSVA++I      + G  ++ D   E + Y VT A GHLV +A P+Q+ +    
Sbjct: 3   VIIAEKPSVAREIAA----IVGATNRKDGFIEGNGYAVTWAFGHLVGLAMPQQYGI--AG 56

Query: 64  WSFAHLPVLPPYFELKPID-----KTKSRLGAVVKLVKRKDV----TRLINACDAGREGE 114
           +   +LP+LP  F L P       + K+  G V +L   +++     R+I A DAGREGE
Sbjct: 57  FRRENLPILPSSFILLPRQVREGKEYKADPGVVKQLGILRELFGMAERIIVATDAGREGE 116

Query: 115 LIFRLIEQYAGGLKNGSYQSLGKPVQRLWLQSMTPAAIRDGFEQLRSDEQMRGLADAARS 174
           LIFR I          SY     P  RLW+ S+T  AIR+G + LR   +   L  +A++
Sbjct: 117 LIFRYIY---------SYLECRTPFVRLWISSLTDRAIREGLQHLRPGNEYDNLYLSAKA 167

Query: 175 RSEADWMVGINGTRAMTAFNSRDGGFFLTTVGRVQTPTLSIVVEREEKIRAHRSRDYWEI 234
           RSEADW+VGIN ++A+     R     + ++GRVQTPTL+I+  R  + +A +   Y+ +
Sbjct: 168 RSEADWIVGINASQALAVAAGRG----VWSLGRVQTPTLAIICSRYLENKAFKPATYFRL 223

Query: 235 HASFLAEAGEYPGKWFDPNFKKPTGDDADAELRADRVWSQREALAIAEAVRGKAASVKEE 294
             S   E  E         F   + +  D   +A+   + R  +  A  VR     V  E
Sbjct: 224 KLSTAKEGTE---------FTVLSTEKFDGREKAE---AARAEVIGARTVR----VVNVE 267

Query: 295 SKPTTQASGLLYDLTSLQREANGRFGFSAKTTLQLAQSLYERHKALTYPRTDSRALPEDY 354
            K T +   LLYDLT+LQ+EAN R+GFSA+ TL +AQSLYE+ K +TYPRT SR + ED 
Sbjct: 268 RKETREQPPLLYDLTTLQKEANSRYGFSAEKTLDIAQSLYEK-KFITYPRTGSRYISED- 325

Query: 355 LPTVKQTFDMLAGSGMKHLAPHAKTAIDNGYIRPSKRIFDNSKVSDHFAIIPTLQAPSGL 414
              V +    L G+ M      A+ A        S+R  DN K++DH A++PT   PS L
Sbjct: 326 ---VAEEIPALIGN-MTRYPRFAEYASRMDTASLSRRSVDNEKIADHHALLPTENLPSEL 381

Query: 415 SEAEQKLYDLVVRRFLAVFFPSAEFMVTTRITSSVGHHFKTEGKVLVKPGWMAVYGKEAA 474
               + +Y++V  R L  F  +     T+    S GH F   G ++V+ GW AV  +   
Sbjct: 382 DADHRIVYEMVAGRMLETFSGACVKENTSLTLQSAGHDFTARGSIMVETGWRAVLNEP-- 439

Query: 475 EDVVDAKEGDKGQNLVP-VREGETVRTETVEPKGLKTKPPARYSEATLLGAMEGAGKLVD 533
              V+ KE D    L+P + +G+ +  +    +  +T+P   ++E++LL AME AG+ + 
Sbjct: 440 ---VEEKEED--MTLLPDIVQGDELPVKGCGTEQKQTRPRPLHTESSLLAAMETAGRELS 494

Query: 534 DDELREAMQEKGLGTPATRAAIIEGLLTEKYILREGREIIPTAKAFQLMTLLRGLGVEEL 593
           D+  REAM++ G+GTPATRAAIIE L   +Y+ RE + ++PT K   +  ++R   + ++
Sbjct: 495 DEAEREAMKDAGIGTPATRAAIIETLFAREYVRREKKSLVPTDKGLAVYAVVRDKKIADV 554

Query: 594 SKPELTGEWEYKLAQMEHGQLSRAAFMGEIAAMTERMVKKAKEYDRDTIPGNYATLSTPC 653
           +   +TG WE  L+++  G++    F   I     ++ K+  E   D      A   T C
Sbjct: 555 A---MTGGWELALSKIATGEMDAPTFHRGIEVFASQIAKELLEARIDG-----AESDTAC 606

Query: 654 PNCGGVVKXNYRRYTCTGADGNSEGCGFSFGKSPAGRTFEPEEAEQLLRDKKIGPLEGFR 713
           P CG  V    +   C   D     CG +  ++ A +    ++  +LL   K G + GF 
Sbjct: 607 PRCGRPVVFYPKLAKCQNPD-----CGLTVWRTVARKELTDKQLAELLTKGKTGTIRGFV 661

Query: 714 SKAGWPFVAEIVI 726
              G  F A + +
Sbjct: 662 KNGGGTFDAALTL 674



 Score = 44.3 bits (103), Expect = 3e-08
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 11/100 (11%)

Query: 758 GSESLGACPKCGSPVHEHGSNYVCEKSVPTLAQPTPSCDFKSGKIILQQPVAREQMSKLL 817
           G+ES  ACP+CG PV  +     C+          P C     + + ++ +  +Q+++LL
Sbjct: 599 GAESDTACPRCGRPVVFYPKLAKCQ---------NPDCGLTVWRTVARKELTDKQLAELL 649

Query: 818 DTGKTDLLDKFVSMRTRRAFKAFLAWDKEAGKVNFEFEPR 857
             GKT  +  FV       F A L  D +  K +F FEPR
Sbjct: 650 TKGKTGTIRGFVK-NGGGTFDAALTLDDQF-KTSFVFEPR 687