Pairwise Alignments

Query, 692 a.a., ATP-dependent DNA helicase Rep from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 669 a.a., helicase a single-stranded DNA dependent ATPase from Pseudomonas putida KT2440

 Score =  489 bits (1260), Expect = e-142
 Identities = 288/659 (43%), Positives = 398/659 (60%), Gaps = 32/659 (4%)

Query: 5   LNIAQLEAVNHLAGPCLVLAGAGSGKTRVITHKIGRLIQ-AGLAADRIAAITFTNKAAAE 63
           LN  Q EA +++ GP LVLAGAGSGKT VIT KI  LIQ  G+ A  I A+TFTNKAA E
Sbjct: 4   LNPRQQEARDYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAARE 63

Query: 64  MRERAAQLVGR-DARKVLICTFHALGVRLLRDDGEVLGLKKQFSILDTDDITSMLKDC-- 120
           M+ER A L+   + R + +CTFH LG+ ++R + E LG K  FSI D  DI ++L D   
Sbjct: 64  MKERVATLLRPGEGRGLTVCTFHNLGLNIIRKEHERLGYKPGFSIFDESDIKALLSDIMQ 123

Query: 121 ---GGTTDTATARGWQWAISAWKGAGMNAAQCLAQAKDEDERVTATIMARYEERLVAYQS 177
               G       +     I AWK   +   + L +A++  E+  A +   Y+  L A+ +
Sbjct: 124 KEYSGDDGIDEIKNM---IGAWKNDLVLPPEALEKARNPREQTAAIVYTHYQRTLKAFNA 180

Query: 178 VDFDDLITLPLKLLREHEDVRARWQKKMGHVLVDEYQDTNATQYELLKLLVGERGRFTAV 237
           VDFDDLI  P+KL +EH +V  RWQ ++ ++LVDEYQDTNA+QY L+K+L+G R +FT V
Sbjct: 181 VDFDDLILQPVKLFQEHPEVLERWQNRVRYLLVDEYQDTNASQYLLVKMLIGMRNQFTVV 240

Query: 238 GDDDQSIYGWRGATLDNLKKLPQDYPELKVIKLEQNYRSTSAILRAANNVIGPNPKLFPK 297
           GDDDQSIY WRGA  +NL  L +DYP LK++ LEQNYRSTS ILR AN +I  NP  F K
Sbjct: 241 GDDDQSIYAWRGARPENLMLLKEDYPSLKIVMLEQNYRSTSRILRCANVLIANNPHAFEK 300

Query: 298 TLWSDLGEGEPVRVVDADNEEHEAERAVARILSLRASSQHKEWRDFAILYRANHMARPFE 357
            LWS++G G+ +RV+   NEE EAER    IL+L   + ++ + DFAILYR N+ A+  E
Sbjct: 301 QLWSEMGVGDEIRVIRCKNEEAEAERVAMEILTLHLRT-NRPYSDFAILYRGNYQAKLIE 359

Query: 358 QSLRRAQVPYKVSGGQSFFDKAEIRDLCAWLRLLVNNNDDPAFLRSATTPKRGIGHTTLQ 417
             L+  QVPY++SGG SFF + E++DL A+LRLLVN +DD A+LR    P+R IG TTL+
Sbjct: 360 LKLQHHQVPYRLSGGNSFFGRQEVKDLMAYLRLLVNPDDDNAYLRVINVPRREIGSTTLE 419

Query: 418 QLGAFATQYKLSLFEALFANSLGTALPPRAVATLHEFGRAVNDLEYRARHTLGHEAARAF 477
           +LG +AT+  +S++ A     LG  L  R    L  F   ++ +    RH +  E   A 
Sbjct: 420 KLGNYATERGISMYAASEELGLGEHLDARYTERLQRFKHWLDGV----RHKVALEDPIAA 475

Query: 478 LTEWLKDIDYEKHLYDSEDNEKVAAARWTNVMDFCDWVAGRCGGKLEEEDGVKIETERKS 537
           L E ++DIDYE  +     ++K A  R +NV    + +      + +EE  + IE     
Sbjct: 476 LHEMIRDIDYENWIRQQTASDKAAEFRISNVWFLVEALKNTL--EKDEEGDMTIEDAIGK 533

Query: 538 LLEVVQTIALLSTLSEREQDQNVVTLSTLHASKGLEWPHVMLVGVNEGLLPFKMEEEPGQ 597
           L+       +L    E E++   V + TLHASKGLE+P+V ++G+ E +LP +   E   
Sbjct: 534 LV----LRDMLERQQEEEENAEGVQMMTLHASKGLEFPYVFIMGMEEEILPHRSSIE--- 586

Query: 598 SDAQAADMAQRLQEERRLMYVGITRAQRTLAVSWLKRRKKGRESIPGLASRFIKEMALD 656
                   A  ++EERRL YVGITRA++TLA ++  +RK+  E I    SRF+ E+  D
Sbjct: 587 --------ADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCTPSRFLDELPPD 637