Pairwise Alignments

Query, 734 a.a., General secretion pathway protein D from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 763 a.a., General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) from Variovorax sp. SCN45

 Score =  755 bits (1949), Expect = 0.0
 Identities = 414/720 (57%), Positives = 519/720 (72%), Gaps = 38/720 (5%)

Query: 35  SQTARAPAAANEPVTLNFVAAEIEAVARTMATITGRNVVVDPRVKGTVNLVTERPVTPTA 94
           +QT+ AP    EP+TLNF  A+IEAVARTMA +TGR+VVVDPRVKGT+NLVT+R + P A
Sbjct: 32  AQTSDAPRRG-EPITLNFANADIEAVARTMAVVTGRDVVVDPRVKGTMNLVTDRAIQPAA 90

Query: 95  ALNQFAAVLRLQGFSLVDTGGLYKIVPEADAKLQGNVV--SAGSVSALPASNTVVTQIFR 152
           A NQFA+ LRLQGF++V+  GLYK+VPEADAKLQ + V  S G+VS+   SN +VTQIFR
Sbjct: 91  AFNQFASALRLQGFAVVEADGLYKVVPEADAKLQSSAVNTSIGAVSS-SGSNQIVTQIFR 149

Query: 153 LNHESANNLVPVLRPLIGPNNTINVNPGNNSLVITDYADNLQRIGRIIASLDVAGATDVE 212
           LN+ES N+L+PVLRPLI PNNTINVNPGNNSLVITDYADN++R+ RIIASLDV  A+DVE
Sbjct: 150 LNYESPNSLLPVLRPLIPPNNTINVNPGNNSLVITDYADNMRRLARIIASLDVPNASDVE 209

Query: 213 IIPLQHAVAADMAALVTRLIDPSTAGG-------AQADQSYKTTLVAEPRSNSLVLRAAN 265
           +I L+H++A+DM  L++RLI+ S +G           D S++TTL+A+PRSNSL+LRAAN
Sbjct: 210 VIQLKHSIASDMVPLISRLIEGSGSGAPGTAAAPGATDASFRTTLLADPRSNSLILRAAN 269

Query: 266 PARLALVRSLVARLD-QPS--SDKLSGNIHVVYLKNADAASLATTLRAALAGESSGGLSG 322
           PAR+ LVR+LV +LD QP+  S+  +GNI+VVYLKNADA  LA TLRAA+A       SG
Sbjct: 270 PARVQLVRTLVEKLDRQPAEGSNGAAGNIYVVYLKNADAVRLAATLRAAMAANQQTSASG 329

Query: 323 SGGLGGSSATSPLNRAALTPTGTASANNNPSTAAVAA---SASPSTGGQIQADPATNSLI 379
             G  GSS     +         +   N  S AA A    +  PSTGGQIQADP TNSLI
Sbjct: 330 QPGAAGSSPVPQQSAPQAMQVNLSGGQNGGSAAASAPLNNANQPSTGGQIQADPTTNSLI 389

Query: 380 ITAPEPQYRQLRAVIDQLDSRRAQVYVESLIAEVNAEKAAEFGIQWQGALGSSGDRVIGL 439
           ITAPEPQYRQ+RAVID+LD RRAQV +E+LI EV+A+KAA FG+QWQ ALG++      +
Sbjct: 390 ITAPEPQYRQMRAVIDKLDGRRAQVMIEALIVEVSAKKAANFGVQWQSALGNNA-----V 444

Query: 440 LGTNFGTGGRNILELAQGNAT-------PSPGMNLGLARRTNGVYVLGFLARFLQENGEG 492
           +GTN      NIL L Q  AT       PSPG+NLG+A +  G Y+LG +A F   +G+ 
Sbjct: 445 IGTNSSLASANILALTQALATKNVAGITPSPGLNLGIAGKIGGQYILGAIANFFNSDGDA 504

Query: 493 NVLSTPNLLTLDNEEAKIVIGQNVPFVTGQFTNT-GSGGNNGSVNPFQTIERKDVGLTLR 551
           NVLSTPNLLTLDNEEAKIVIGQNVPFVTGQ+ +T GS G    +NPF T+ERKDVGLTLR
Sbjct: 505 NVLSTPNLLTLDNEEAKIVIGQNVPFVTGQYASTSGSVG----INPFTTVERKDVGLTLR 560

Query: 552 VKPQISENGTIKMTIYQEVSNVVPSSVNSTTGLITNKRTIESTVLVEDGAVVVLGGLLQD 611
           V+P I+ENGT+KMTI+QE S V  ++     G  TNKR+IES+VLVEDG +V+LGGLL D
Sbjct: 561 VRPTINENGTVKMTIFQETSTVDQNTAKDPNGPTTNKRSIESSVLVEDGGLVMLGGLLSD 620

Query: 612 EYAGNQEKVPGLGDVPIFGNLFRSETRSRKKTNLMVFLRPVVMRDGRETSSLALDRYELM 671
           +Y    EKVP  GD+P+ GNLF++E R+R K+NLM+FLRP VMRDG  T + A DRY+ +
Sbjct: 621 DYGNTVEKVPVAGDIPVLGNLFKNEVRTRNKSNLMMFLRPAVMRDGASTQAFAYDRYDEI 680

Query: 672 RSVQKDAQPRQSSVL--GVNEAPVMPPQLPPRAPSPDGTAPVRSLADPQTAPPVNPAPQN 729
           R +Q+  QP   +++  GV+ APV+ P++P    +P+     R +   Q  PP   A  N
Sbjct: 681 RGMQQRTQPSTDNIMLRGVDSAPVL-PEVPLVRAAPNAPGSER-IGGTQLIPPPRAAADN 738