Pairwise Alignments

Query, 734 a.a., General secretion pathway protein D from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 740 a.a., type II secretion system secretin GspD from Pseudomonas fluorescens SBW25

 Score =  174 bits (440), Expect = 2e-47
 Identities = 172/682 (25%), Positives = 300/682 (43%), Gaps = 69/682 (10%)

Query: 33  GISQTARAPAAANE-------PVTLNFVAAEIEAVART-MATITGRNVVVDPRVKGTVNL 84
           G  Q  RAP+AA          +  NF    IEAV  + M  +   N  +   VKG V+ 
Sbjct: 80  GNQQFVRAPSAAPAGKEEGAGDIVFNFADQPIEAVINSVMGDLLHENYSIAQGVKGNVSF 139

Query: 85  VTERPVTPTAALNQFAAVLRLQGFSLVDTGGLYKIVPEADAKLQGNVVSAGSVSALPASN 144
            T +PV    AL+    +L     +++  G  Y I+P A+  + G +V    VS    S+
Sbjct: 140 STSKPVNKQQALSILETLLSWTDNAMIKQGNRYVILP-ANQAVAGKLVPEMRVSQ--PSS 196

Query: 145 TVVTQIFRLNHESANNLVPVLRPLIGPNNTINVNPGNNSLVITDYADNLQRIGRIIASLD 204
            +  ++F L + SA  +  +L+P    N  + V+P  N L +    + L      I + D
Sbjct: 197 GLSARLFPLRYISATEMQKLLKPFARENAFLLVDPARNVLSLAGTPEELANYQDTIDTFD 256

Query: 205 V--AGATDVEIIPLQHAVAADMAALVTRLIDPSTAGGAQADQSYKTTLVAEPRSNSLVLR 262
           V       V +  LQ A  A++   + ++  P +        +     +   R+NS+V  
Sbjct: 257 VDWLKGMSVGVFGLQRASVAELMPELQKMFGPDSG----MPLAGMVRFLPIERTNSVVAI 312

Query: 263 AANPARLALVRSLVARLDQPSSDKLSGNIHVVYLKNADAASLATTLRAAL---AGESSGG 319
           ++ P  L+ V   +  +D+   ++    ++V  ++N  A  LA  LR      A +    
Sbjct: 313 SSQPQYLSEVGDWIHTIDEGGGNE--PQMYVYDVRNMKATDLAKYLRQIYGTGAIKDDTP 370

Query: 320 LSGSGGLGGSSATSP--LNRAALTPTGTASANNNPSTAAVAASASPST------------ 365
              + GL  ++ +SP   + +  TP G ++  NN   AA     +P              
Sbjct: 371 AKVAPGLRTATLSSPGTNSTSGSTPGGLSNTLNNNQPAAEDEEQAPDAEQDDAEQGATED 430

Query: 366 --------GGQIQADPATNSLIITAPEPQYRQLRAVIDQLDSRRAQVYVESLIAEVNAEK 417
                   G +I A  ++N L++     Q++++ + I +LD+   QV +E+ I EV    
Sbjct: 431 APTKSLDAGTRITAQKSSNQLLVRTRPVQWKEIESAIKRLDNPPLQVQIETRILEVKLTG 490

Query: 418 AAEFGIQWQGALGS-SGDRVIGLLGTNFGTGGRNILELAQGNATPSPGMNLGLARRTNGV 476
             + G+QW   LG  +G+     +G   G+ G          A    G  LG A      
Sbjct: 491 ELDLGVQWY--LGRLAGNSTSTTVGNTAGSQG----------ALGGGGAGLGAADSLFYS 538

Query: 477 YV---LGFLARFLQENGEGNVLSTPNLLTLDNEEAKIVIGQNVPFVTGQFTNTGSGGNNG 533
           +V   L      L+ NG   VLS P+L+ ++N+ A+I +G N+P ++    NTG+     
Sbjct: 539 FVSSNLQVALHALETNGRTQVLSAPSLVVMNNQPAQIQVGDNIP-ISQTTVNTGT----- 592

Query: 534 SVNPFQTIERKDVGLTLRVKPQISENGTIKMTIYQEVSNV---VPSSVNSTTGLITNKRT 590
           S     ++E    G+ L V P+I+  G + M I Q+VS+      SS ++      + R+
Sbjct: 593 SDTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDAQDQASSSNDTQNNPRISTRS 652

Query: 591 IESTVLVEDGAVVVLGGLLQDEYAGNQEKVPGLGDVPIFGNLFRSETRSRKKTNLMVFLR 650
           + + V V+ G  V+LGGL++ + A +   VP LG +P    LF + ++S+ +T L+V + 
Sbjct: 653 VSTQVAVQSGQTVLLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKDRTELIVLIT 712

Query: 651 PVVMRDGRETSSLALDRYELMR 672
           P V+    +   +  D  + M+
Sbjct: 713 PRVITSSSQARQVTDDYRQQMQ 734