Pairwise Alignments

Query, 734 a.a., General secretion pathway protein D from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 788 a.a., type II secretion system secretin GspD from Pseudomonas fluorescens SBW25

 Score =  545 bits (1404), Expect = e-159
 Identities = 318/699 (45%), Positives = 439/699 (62%), Gaps = 51/699 (7%)

Query: 31  GDGISQTARAPAAANEPVTLNFVAAEIEAVARTMATITGRNVVVDPRVKGTVNLVTERPV 90
           G  I  T  +    ++PV+LNFV A+I+AV R ++  TGR  +VDPRV G++ LV+E  V
Sbjct: 82  GASIGGTTLSNPLGSQPVSLNFVDADIQAVVRGLSRATGRQFLVDPRVTGSLTLVSEGEV 141

Query: 91  TPTAALNQFAAVLRLQGFSLVDTGGLYKIVPEADAKLQGNVVSAGSVSALPASNTVVTQI 150
               A +   A LR+QGFS+VD GG+  +VPEADAKL G  V +      PA+N ++T+ 
Sbjct: 142 PAHQAYDMLLAALRMQGFSVVDVGGVAHVVPEADAKLLGGPVYSAD---RPAANGMLTRT 198

Query: 151 FRLNHESANNLVPVLRPLIGPNNTINVNPGNNSLVITDYADNLQRIGRIIASLDVAGATD 210
           FRL++E+A NL+PVLRP++ PNN IN  PGNN+LVITDYADNL R+ ++I S+D   A D
Sbjct: 199 FRLHYENAVNLIPVLRPIVSPNNPINAYPGNNTLVITDYADNLARVAQLIDSIDSPSAID 258

Query: 211 VEIIPLQHAVAADMAALVTRLIDPSTAGGAQADQSYKTTLVAEPRSNSLVLRAANPARLA 270
            +++ +Q+ +A D+A +V++L++   +     D + K ++V +PRSNS+++RA +P R  
Sbjct: 259 TDVVQVQNGIAVDIAGMVSQLLEQPGS-----DATQKISVVGDPRSNSIIIRAGSPERTE 313

Query: 271 LVRSLVARLDQPSSDKLSGNIHVVYLKNADAASLATTLRAALAGESSGG--------LSG 322
           L R+LV +LD   S+    N+HVVYL+NA AA LA  LR  L GES  G        LS 
Sbjct: 314 LARNLVYKLDNAQSNP--SNLHVVYLRNAQAAKLAQALRGLLTGESDSGTGDTGRSVLSA 371

Query: 323 SGGL---GGSSATSPLNRAALTPTGTASAN-----------NNPSTAAVAA---SASPST 365
            GG    G S   SP + +  + +G++S+N           N+ S A   A   S + S 
Sbjct: 372 MGGNTSGGQSGQNSPSSTSQTSSSGSSSSNGTGMGYGQSGGNSSSQAGAQATDQSVAFSA 431

Query: 366 GG-QIQADPATNSLIITAPEPQYRQLRAVIDQLDSRRAQVYVESLIAEVNAEKAAEFGIQ 424
           GG  IQAD  TN+L+I+APEP YR LR VID LD RRAQV +ESLI EV  + A EFG+Q
Sbjct: 432 GGVTIQADATTNTLLISAPEPLYRNLREVIDMLDQRRAQVVIESLIVEVGEDDANEFGVQ 491

Query: 425 WQGALGSSGDRVIGLLGTNFGTGGRNILELAQGNATPSPGMNLGLARRT------NGVYV 478
           WQ     +G  VIG  GTN G  G     L   +A P  G+++G    T        V  
Sbjct: 492 WQSG-DLAGKGVIG--GTNLGGSGLQTGGLTSIDALPG-GLSVGYLSGTVNIPGVGNVMD 547

Query: 479 LGFLARFLQENGEGNVLSTPNLLTLDNEEAKIVIGQNVPFVTGQFTNTGSGGNNGSVNPF 538
           L  LAR L+  G  NVLSTPNLLTLDNE A I +GQ +PFV+G +   G G +N   NPF
Sbjct: 548 LKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVSGSYVTGGGGTSN---NPF 604

Query: 539 QTIERKDVGLTLRVKPQISENGTIKMTIYQEVSNVVPSSVNSTT--GLITNKRTIESTVL 596
           QT+ R++VGL L V+PQISE GT+K+ IYQEVS++   + +S T  G++TNKR I++++L
Sbjct: 605 QTVTREEVGLKLNVRPQISEGGTVKLDIYQEVSSIDERASSSATSAGVVTNKRAIDTSIL 664

Query: 597 VEDGAVVVLGGLLQDEYAGNQEKVPGLGDVPIFGNLFRSETRSRKKTNLMVFLRPVVMRD 656
           ++DG ++VLGGLLQD Y+ + E VP L  +P  G LFR+E R+  KTNLMVFLRP ++RD
Sbjct: 665 LDDGQIMVLGGLLQDGYSQSNEAVPWLSSIPGLGALFRNERRATTKTNLMVFLRPYIIRD 724

Query: 657 GRETSSLALDRYELMRSVQKDAQPRQSSVLGVNEAPVMP 695
                ++ L+RY+ +R  Q   QP +S  +   +AP +P
Sbjct: 725 SAGGRAITLNRYDFIRRAQGALQPERSWAMPGMQAPQLP 763