Pairwise Alignments

Query, 734 a.a., General secretion pathway protein D from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 770 a.a., type II secretion system secretin GspD from Pseudomonas fluorescens SBW25

 Score =  549 bits (1414), Expect = e-160
 Identities = 319/697 (45%), Positives = 437/697 (62%), Gaps = 58/697 (8%)

Query: 35  SQTARAPAAA-------NEPVTLNFVAAEIEAVARTMATITGRNVVVDPRVKGTVNLVTE 87
           S    APAA        ++PV LNFV A+I+AV R ++  TG+  +VDPRVKG + LV+E
Sbjct: 70  SARGHAPAAVKARNPLGDQPVQLNFVDADIQAVVRALSRATGQQFLVDPRVKGNLTLVSE 129

Query: 88  RPVTPTAALNQFAAVLRLQGFSLVDTGGLYKIVPEADAKLQGN-VVSAGSVSALPASNTV 146
             V    A +   A LR+QGFS+VD GG+ ++VPEADAKL G  + SAGS       + +
Sbjct: 130 GQVPAHQAYDMLLAALRMQGFSVVDVGGVAQVVPEADAKLLGGPIYSAGS-------SGM 182

Query: 147 VTQIFRLNHESANNLVPVLRPLIGPNNTINVNPGNNSLVITDYADNLQRIGRIIASLDVA 206
            T+ FRL +E+A NL+PVLRP++ PNN IN  PGNNS+VITDYA+NL R+ +II+ +D  
Sbjct: 183 QTRTFRLQYENAVNLIPVLRPIVSPNNPINAYPGNNSIVITDYAENLARVAQIISGIDTP 242

Query: 207 GATDVEIIPLQHAVAADMAALVTRLIDPSTAGGAQADQSYKTTLVAEPRSNSLVLRAANP 266
            A D +++ +Q+ +A D+AA+V+ L++  T G   ADQ+ K  ++ +PRSNS+++R+ +P
Sbjct: 243 SAIDTDVVMVQNGIAVDIAAMVSELLE--TQG---ADQTQKINVIGDPRSNSIIIRSGSP 297

Query: 267 ARLALVRSLVARLDQPSSDKLSGNIHVVYLKNADAASLATTLRAALAGESSGG------- 319
            R  L R+L+ +LD   S+    N+HVVYL+NA A+ LA +LR  L GES  G       
Sbjct: 298 ERTELARNLIYKLDNAQSNP--SNMHVVYLRNAQASKLAQSLRGLLTGESDSGVSDDARG 355

Query: 320 -LSGSGGLG-GSSATSPLNRAALTPTGTA-------SANNNPSTAAVAA----SASPSTG 366
            LS  GG G  +  TS    ++ TPTG+        +  + PST+  +     +A  + G
Sbjct: 356 KLSAMGGNGKNTQGTSNAQNSSGTPTGSGVQSGYGQTTGSTPSTSGTSTENQDTAFSAGG 415

Query: 367 GQIQADPATNSLIITAPEPQYRQLRAVIDQLDSRRAQVYVESLIAEVNAEKAAEFGIQWQ 426
             IQAD  TN+L+I+AP+P YR LR VID LD RRAQV +ESLI EV  + A EFG+QWQ
Sbjct: 416 VTIQADATTNTLLISAPDPLYRNLREVIDMLDQRRAQVVIESLIVEVGEDDATEFGVQWQ 475

Query: 427 -GALGSSGDRVIGLLGTNFGTGGRNILELAQGNATPSP-GMNLGLARRTNGVYVLG---- 480
            G L   G    G  G N G  G N    ++ +    P G+N+GL   T  +  +G    
Sbjct: 476 AGNLAGKG----GFGGVNLGGSGVNSTPTSKTSIDVLPKGLNVGLVNGTVDIPGIGKVLD 531

Query: 481 --FLARFLQENGEGNVLSTPNLLTLDNEEAKIVIGQNVPFVTGQFTNTGSGGNNGSVNPF 538
              LAR L+  G  NVLSTPNLLTLDNE A I +GQ +PFVTG +   G G +N   NPF
Sbjct: 532 LKVLARALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSN---NPF 588

Query: 539 QTIERKDVGLTLRVKPQISENGTIKMTIYQEVSNVVPSSVNSTTGLITNKRTIESTVLVE 598
           QT++R++VGL L V+PQISE GT+K+ IYQEVS V  +  +   G +TNKR I++++L++
Sbjct: 589 QTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSTV-DTRASVDAGTVTNKRAIDTSILLD 647

Query: 599 DGAVVVLGGLLQDEYAGNQEKVPGLGDVPIFGNLFRSETRSRKKTNLMVFLRPVVMRDGR 658
           DG ++VLGGLLQD Y+ + + VP L D+P  G LFR+E RS  KTNLMVFLRP ++RD  
Sbjct: 648 DGQIMVLGGLLQDGYSQSNDAVPWLSDIPGLGALFRNEKRSVNKTNLMVFLRPYIIRDSG 707

Query: 659 ETSSLALDRYELMRSVQKDAQPRQSSVLGVNEAPVMP 695
              S+ L+RYE MR  Q   QP  S  +   +AP +P
Sbjct: 708 AGRSITLNRYEFMRRAQGGLQPEHSWAMPDVQAPQLP 744