Pairwise Alignments

Query, 734 a.a., General secretion pathway protein D from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 650 a.a., Putative type II secretion system protein D from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  281 bits (719), Expect = 7e-80
 Identities = 209/675 (30%), Positives = 330/675 (48%), Gaps = 62/675 (9%)

Query: 43  AANEPVTLNFVAAEIEAVARTMATITGRNVVVDPRVKGTVNLVTERPVTPTAALNQFAAV 102
           A NE    NF  A+I      +    G+ +++DP V+GT+++ +    +       F ++
Sbjct: 23  AENEQYGANFNNADIRQFVEIVGQHLGKTILIDPSVQGTISVRSNDTFSQQEYYQFFLSI 82

Query: 103 LRLQGFSLVDT-GGLYKIVPEADAKLQGNVVSAGSVSALPASNTVVTQIFRLNHESANNL 161
           L L G+S++    G  ++V  A+ K    +++  S   +   + +VT+I  L +  A +L
Sbjct: 83  LDLYGYSVITLDNGFLRVVRSANVKTSPGMIADSSRPGV--GDELVTRIVPLENVPARDL 140

Query: 162 VPVLRPLIGPN---NTINVNPGNNSLVITDYADNLQRIGRIIASLDVAGATDVEIIPLQH 218
            P+LR ++      N ++  P +N L++T  A  + ++  +I  +DV G    +II L++
Sbjct: 141 APLLRQMMDAGSVGNVVHYEP-SNVLILTGRASTINKLIEVIKRVDVIGTEKQQIIHLEY 199

Query: 219 AVAADMAALVTRLIDPSTAGGAQADQSYKTTLVAEPRSNSLVLRAANPARLALVRSLVAR 278
           A A D+A ++ +LI  S  G +Q        +VA+ R+NSL++     AR   + SL+  
Sbjct: 200 ASAEDLAEILNQLISES-HGKSQMPALLSARIVADKRTNSLIISGPEKAR-QRITSLLKS 257

Query: 279 LDQPSSDKLSGNIHVVYLKNADAASLATTLRAALAGESSGGLSGSGGLGGSSATSPLNRA 338
           LD   S++  GN  V YLK A     AT L   L G S       G     S++  ++  
Sbjct: 258 LDVEESEE--GNTRVYYLKYAK----ATNLVEVLTGVSEKLKDEKGNARKPSSSGAMDNV 311

Query: 339 ALTPTGTASANNNPSTAAVAASASPSTGGQIQADPATNSLIITAPEPQYRQLRAVIDQLD 398
           A+T                             AD  TNSL+ITA +    +L  VI +LD
Sbjct: 312 AIT-----------------------------ADEQTNSLVITADQSVQEKLATVIARLD 342

Query: 399 SRRAQVYVESLIAEVNAEKAAEFGIQWQGALGSSGDRVIGLLGTNFGTGGRNILELAQGN 458
            RRAQV VE++I EV        G+QW  A  + G +     G       + + +  +  
Sbjct: 343 IRRAQVLVEAIIVEVQDGNGLNLGVQW--ANKNVGAQQFTNTGLPIFNAAQGVADYKKNG 400

Query: 459 ATPSPGMNLGLARRTNGVYV------LGFLARFLQENGEGNVLSTPNLLTLDNEEAKIVI 512
              S      +    NG+         G L   L  N + ++L+TP+++TLDN+ A   +
Sbjct: 401 GITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNV 460

Query: 513 GQNVPFVTGQFTNTGSGGNNGSVNPFQTIERKDVGLTLRVKPQISENGTIKMTIYQEVSN 572
           GQ+VP ++G  T +G        N F T+ERK VG  L+V PQ++E   + + I QEVS+
Sbjct: 461 GQDVPVLSGSQTTSGD-------NVFNTVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSS 513

Query: 573 VVPSSVNSTTGLITNKRTIESTVLVEDGAVVVLGGLLQDEYAGNQEKVPGLGDVPIFGNL 632
            V SS NST G   N RTI++ VLV+ G  VVLGGLL D       KVP LGD+P+ G L
Sbjct: 514 -VDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQL 572

Query: 633 FRSETRSRKKTNLMVFLRPVVMRDGRETSSLALDRY-ELMRSVQKDAQPRQSSVLGVNEA 691
           FR  +  R K NLMVF+RP ++RD     SL+ ++Y   ++  Q+    +  +++G  + 
Sbjct: 573 FRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYLQEQQQRIDGKSKALVGSEDL 632

Query: 692 PVMPPQ-LPPRAPSP 705
           PV+        AP+P
Sbjct: 633 PVLDENTFNSHAPAP 647