Pairwise Alignments

Query, 734 a.a., General secretion pathway protein D from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 695 a.a., type II secretion system secretin GspD from Dickeya dianthicola ME23

 Score =  224 bits (570), Expect = 2e-62
 Identities = 180/647 (27%), Positives = 316/647 (48%), Gaps = 68/647 (10%)

Query: 41  PAAANEPVTLNFVAAEIEAVARTMATITGRNVVVDPRVKGTVNLVTERPVTPTAALNQFA 100
           P  A++  + +F   EI+    T A I  +N+++DP + G +++ +   +      + F 
Sbjct: 39  PENASKKYSASFREVEIKEFVATAAQILKKNIIIDPSITGQISVRSYDDLNENQYADFFI 98

Query: 101 AVLRLQGFSLVDTGG-LYKIVPEADAKLQGNVVSAGSVSALPASNTVVTQIFRLNHESAN 159
            V+   G+S+V        +VP+A +     + +A +      S  +V ++ R+N  S  
Sbjct: 99  NVMEAYGYSVVKIDNHTLNVVPQAQS-----LRAAWAEGNKGRSKNIVVRLARMNVLSGA 153

Query: 160 NLVPVLRPLIGPNNTINVN--PGNNSLVITDYADNLQRIGRIIASLDVAGA-TDVEIIPL 216
            L P+L  LI  N+ + +      N  + T   D ++R+  I+  +D A A +   +  +
Sbjct: 154 ELEPILG-LIAENSAVKLKYYSSGNLFIFTGREDVVERLVDIVNQIDNARADSSPTVFNV 212

Query: 217 QHAVAADMAALVTRLIDPSTAGGAQADQSYKTTLVAEPRSNSLVLRAANPARLALVRSLV 276
             A A+D+A  +      ST      +      +     + +++++     R  + R L+
Sbjct: 213 SQAKASDIAKSLQ-----STFRNLTPEDKNAPLIYGNDATRTIMVKGGAHLRAEISR-LI 266

Query: 277 ARLDQPSSDKLSGNIHVVYLKNADAASLATTL----RAALAGESSGG-------LSGSGG 325
           + +D P          V +LK ADA  +A         + + E +GG       +     
Sbjct: 267 SAMDVPGQQS-----RVFFLKYADAVQMAKLFTNNNNPSGSPEPAGGNTMSMEAMLAQQS 321

Query: 326 LGGSSATSPLN---RAALTPTGTASANNNPSTAAVAASASPSTGGQIQADPATNSLIITA 382
            G  S+  P N   +AA   T  A+  +N S +  +   +     ++ AD   N+L+++A
Sbjct: 322 PGSMSSGQPANLDGQAASGGTTPAADFSNDSNSMFSDGDTLVRQTRVHADRDNNALVVSA 381

Query: 383 PEPQYRQLRAVIDQLDSRRAQVYVESLIAEVNAEKAAEFGIQWQGALGSSGDRVIGLLGT 442
           P    +Q  ++I QLD R  QV VE+++ EV   +    GI W       G++  G  G+
Sbjct: 382 PPAAMQQAASIIQQLDVRHEQVLVEAIVVEVQKAEGLNLGIAW-------GNKNYG--GS 432

Query: 443 NFGTGGRNILELAQGNATPSPGMNLGLARRTNGVYVLGF-------LARFLQENGEGNVL 495
           NF     N + +  G +  +P +N    + T G+ V GF       L   L+ N   N++
Sbjct: 433 NF-----NSINVGNGFSQANPLVNA--LKGTEGL-VAGFYHGNWGTLFNALESNKSNNIV 484

Query: 496 STPNLLTLDNEEAKIVIGQNVPFVTGQFTNTGSGGNNGSVNPFQTIERKDVGLTLRVKPQ 555
           +TP+++TLDN  A+  +GQ+VP +TG  T      NN ++  F T++R+ +G+   + P+
Sbjct: 485 ATPSVVTLDNHRAEFNVGQDVPILTGSQTT-----NNDNI--FNTVQRRTIGIKFSILPR 537

Query: 556 ISENGTIKMTIYQEVSNVVPSS-VNSTTGLITNKRTIESTVLVEDGAVVVLGGLLQDEYA 614
           I+++GTI +TI QE+S++  ++ VN+  G + N RT+ + V V+D   VV+GGLL DE  
Sbjct: 538 INQSGTILLTISQEISSLSDTAQVNNNLGAVFNIRTVNNVVQVQDNETVVIGGLLDDEKK 597

Query: 615 GNQEKVPGLGDVPIFGNLFRSETRSRKKTNLMVFLRPVVMR-DGRET 660
               KVP LGD+P  GN+FR  + +  K NLM+F+RP ++R DG ET
Sbjct: 598 ETVNKVPLLGDIPWLGNVFRYTSHNDDKRNLMLFIRPRIIRSDGAET 644