Pairwise Alignments

Query, 734 a.a., General secretion pathway protein D from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 714 a.a., type II secretion system secretin GspD from Dickeya dianthicola 67-19

 Score =  281 bits (719), Expect = 8e-80
 Identities = 209/672 (31%), Positives = 335/672 (49%), Gaps = 51/672 (7%)

Query: 51  NFVAAEIEAVARTMATITGRNVVVDPRVKGTVNLVTERPVTPTAALNQFAAVLRLQGFSL 110
           +F   +I+    T++    + V++DP V+GT+++ +   +        F +VL + GFS+
Sbjct: 33  SFKGTDIQEFINTVSKNLNKTVIIDPTVRGTISVRSYDMMNEGQYYQFFLSVLDVYGFSV 92

Query: 111 VDT-GGLYKIVPEADAKLQGNVVSAGSVSALPASNTVVTQIFRLNHESANNLVPVLRPL- 168
           V    G+ K++   DAK   + +   +       + +VT++  LN+ +A +L P+LR L 
Sbjct: 93  VPMDNGVLKVIRSKDAK--SSSIPLANNEQPGVGDELVTRVVPLNNVAARDLAPLLRQLN 150

Query: 169 --IGPNNTINVNPGNNSLVITDYADNLQRIGRIIASLDVAGATDVEIIPLQHAVAADMAA 226
              G    ++  P +N L++T  A  ++R+  I+ ++D  G  ++  +PL +A A D+A 
Sbjct: 151 DNAGAGTVVHYEP-SNVLLMTGRAAVIKRLVDIVNTVDKTGDREMITVPLTYASAEDVAK 209

Query: 227 LVTRLIDPSTAGGAQADQSYKTTLVAEPRSNSLVLRAANPARLALVRSLVARLDQPSSDK 286
           LV  L          +  +    +VA+ R+NS+V+      R   +  ++ +LD+     
Sbjct: 210 LVNDLNKTDEKNALPS--TMLANVVADERTNSVVVSGEENGRQRAIE-MIRQLDR--KQV 264

Query: 287 LSGNIHVVYLKNADAASLATTLRAALAGESSGGLSGSGGLGGSSATSPLNRAALTPTGTA 346
             G   V+YLK A A  L   L       +SG  + S      S++S  + + L     +
Sbjct: 265 AQGGTKVIYLKYAKALDLIEVLAG---NGTSGNRNSSSSNASRSSSSRSSNSGLNSNNNS 321

Query: 347 SANNNPSTAAVAASASPSTGG-----------------------QIQADPATNSLIITAP 383
           S + N S ++ ++S+S S+ G                        ++A   TNSLIITAP
Sbjct: 322 SGSTNSSGSSSSSSSSSSSMGFGSTFGSTSSSGGRTIVIQGKEVTVRAHDQTNSLIITAP 381

Query: 384 EPQYRQLRAVIDQLDSRRAQVYVESLIAEVNAEKAAEFGIQWQGALGSSGDRVIGLLGTN 443
               R L  VI+QLD RR QV VE++IAE+        GIQW  A   +G       G  
Sbjct: 382 PDIMRDLEQVINQLDIRRPQVLVEAIIAEIQDADGLNLGIQW--ANKRAGMTQFTNTGIP 439

Query: 444 FGTGGRNILEL-AQGNATPSPGMNLGLARRTNGVYVLG---FLARFLQENGEGNVLSTPN 499
             T      +  + G  T +    LG        +  G    L   L  + + +VL+TP+
Sbjct: 440 ISTAVIGTDQFRSDGTLTTAYASALGSFNGITAGFYRGNWSMLLTALSRDSKNDVLATPS 499

Query: 500 LLTLDNEEAKIVIGQNVPFVTGQFTNTGSGGNNGSVNPFQTIERKDVGLTLRVKPQISEN 559
           ++TLDN EA   +GQ VP +TG  T  GSG N      F T+ERK VG+ LRVKPQI+E 
Sbjct: 500 IVTLDNMEATFNVGQEVPVLTGSQTTVGSGNNI-----FNTVERKTVGIKLRVKPQINEG 554

Query: 560 GTIKMTIYQEVSNVVPS--SVNSTTGLITNKRTIESTVLVEDGAVVVLGGLLQDEYAGNQ 617
            ++ + I QEVS+V  S  S NS+ G   N RT+ + V+V +G  VV+GGLL      + 
Sbjct: 555 DSVLLQIEQEVSSVADSNSSTNSSLGATFNTRTVNNAVMVTNGETVVVGGLLDKTTIESN 614

Query: 618 EKVPGLGDVPIFGNLFRSETRSRKKTNLMVFLRPVVMRDGRETSSLALDRYELMRSVQKD 677
           +KVP LGD+P  G+LFRS+++S  K NLM+FLRP ++RD  +    ++++Y    + Q+ 
Sbjct: 615 DKVPLLGDIPWLGSLFRSKSQSVNKRNLMLFLRPTIIRDPGQFQEASINKYRSFNNEQQQ 674

Query: 678 AQPRQSSVLGVN 689
            +   + VL  N
Sbjct: 675 QRGEGNRVLDNN 686