Pairwise Alignments

Query, 734 a.a., General secretion pathway protein D from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 710 a.a., type II secretion system secretin GspD from Dickeya dadantii 3937

 Score =  278 bits (712), Expect = 5e-79
 Identities = 210/676 (31%), Positives = 346/676 (51%), Gaps = 63/676 (9%)

Query: 51  NFVAAEIEAVARTMATITGRNVVVDPRVKGTVNLVTERPVTPTAALNQFAAVLRLQGFSL 110
           +F   +I+    T++    + V++DP V+GT+++ +   +        F +VL + GFS+
Sbjct: 33  SFKGTDIQEFINTVSKNLNKTVIIDPTVRGTISVRSYDMMNEGQYYQFFLSVLDVYGFSV 92

Query: 111 VDT-GGLYKIVPEADAKLQGNVVSAGSVSALPASNTVVTQIFRLNHESANNLVPVLRPL- 168
           V    G+ K++   DAK     ++      +   + +VT++  LN+ +A +L P+LR L 
Sbjct: 93  VPMDNGVLKVIRSKDAKSSSIPLANNEQPGI--GDELVTRVVPLNNVAARDLAPLLRQLN 150

Query: 169 --IGPNNTINVNPGNNSLVITDYADNLQRIGRIIASLDVAGATDVEIIPLQHAVAADMAA 226
              G    ++  P +N L++T  A  ++R+  I+ ++D  G  ++  +PL +A A D+A 
Sbjct: 151 DNAGAGTVVHYEP-SNVLLMTGRAAVIKRLVDIVNTVDKTGDREMVTVPLTYASAEDVAK 209

Query: 227 LVTRLIDPSTAGGAQADQSYKTTLVAEPRSNSLVLRAANPARLALVRSLVARLDQPSSDK 286
           LV  L          +  +    +VA+ R+NS+V+     AR   V  ++ +LD+     
Sbjct: 210 LVNDLNKSDEKNALPS--TMLANVVADGRTNSVVVSGEENARQRAVE-MIRQLDR--KQV 264

Query: 287 LSGNIHVVYLKNADAASLATTLRAALAGESSGGLSGSGGLGGSSATSPLNRAALTPTGTA 346
           + G   V+YLK A A  L   L    AG  + G   S     S  +SP + ++     ++
Sbjct: 265 VQGGTKVIYLKYAKALDLIEVL----AGNGTSGNRNSSSSNASRPSSPRSGSSSNSNSSS 320

Query: 347 SANNNPSTAAVAASASPS------------TGGQ----------IQADPATNSLIITAPE 384
            ++ + S ++ ++S+S S            +GG+          ++A   TNSLIITAP 
Sbjct: 321 GSSGSSSGSSSSSSSSSSMGFGSAFGSTSSSGGRTITIQGKEVTVRAHDQTNSLIITAPP 380

Query: 385 PQYRQLRAVIDQLDSRRAQVYVESLIAEVNAEKAAEFGIQWQGALG------SSGDRV-I 437
              R L  VI+QLD RR QV VE++IAE+        GIQW           ++G  +  
Sbjct: 381 DIMRDLEQVINQLDIRRPQVLVEAIIAEIQDADGLNLGIQWANKRAGMTQFTNTGIPIST 440

Query: 438 GLLGTN-FGTGGRNILELAQGNATPS-PGMNLGLARRTNGVYVLGFLARFLQENGEGNVL 495
            ++GT+ F + G   L  A  +A  S  G+  G  R          L   L  + + +VL
Sbjct: 441 AVIGTDQFRSNGT--LTTAYASALSSFNGVTAGFYRGN-----WSMLLTALSSDSKNDVL 493

Query: 496 STPNLLTLDNEEAKIVIGQNVPFVTGQFTNTGSGGNNGSVNPFQTIERKDVGLTLRVKPQ 555
           +TP+++TLDN EA   +GQ VP +TG  T +         N F T+ERK VG+ LRVKPQ
Sbjct: 494 ATPSIVTLDNMEATFNVGQEVPVLTGSQTTSAD-------NIFNTVERKTVGIKLRVKPQ 546

Query: 556 ISENGTIKMTIYQEVSNVVPS--SVNSTTGLITNKRTIESTVLVEDGAVVVLGGLLQDEY 613
           I+E  ++ + I QEVS+V  S  S NS+ G+  N RT+ + V+V +G  VV+GGLL    
Sbjct: 547 INEGDSVLLQIEQEVSSVADSNSSTNSSLGVTFNTRTVNNAVMVTNGETVVVGGLLDKTS 606

Query: 614 AGNQEKVPGLGDVPIFGNLFRSETRSRKKTNLMVFLRPVVMRDGRETSSLALDRYELMRS 673
             + +KVP LGD+P  G+LFRS+++  +K NLM+FLRP ++RD  +    ++++Y    +
Sbjct: 607 VESNDKVPLLGDIPWLGSLFRSKSQEVRKRNLMLFLRPTIIRDPGQFQEASINKYRSFNN 666

Query: 674 VQKDAQPRQSSVLGVN 689
            Q+  +   + VL  N
Sbjct: 667 EQQQQRGEGNGVLDNN 682