Pairwise Alignments

Query, 734 a.a., General secretion pathway protein D from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 696 a.a., type II secretion system secretin GspD from Dickeya dadantii 3937

 Score =  218 bits (556), Expect = 6e-61
 Identities = 179/665 (26%), Positives = 309/665 (46%), Gaps = 74/665 (11%)

Query: 34  ISQTARAPAAANEPVTLNFVAA----EIEAVARTMATITGRNVVVDPRVKGTVNLVTERP 89
           +   +  PA  N+  +  + A+    EI+    T A I  +N+++DP + G +++ +   
Sbjct: 27  VDDASPLPAKKNDEKSKKYSASFREVEIKEFVATAAQILKKNIIIDPSITGQISVRSYDD 86

Query: 90  VTPTAALNQFAAVLRLQGFSLVDTGG-LYKIVPEADAKLQGNVVSAGSVSALPASNTVVT 148
           +     ++ F  V+   G+S+V        +VP A +     + +  +         +V 
Sbjct: 87  LDENQYVDFFLNVMEAYGYSVVKIDNHTLNVVPLAQS-----LRATWAEGRKGRGKNIVV 141

Query: 149 QIFRLNHESANNLVPVLRPLIGPNNTINVN--PGNNSLVITDYADNLQRIGRIIASLDVA 206
           ++ ++N  S   L P+L   I  N+ + +      N  + T   D ++R+  I+  +D A
Sbjct: 142 RLAKMNALSGAELEPILGA-ISENSAVKLKYYSSGNLFIFTGREDVVERLIDIVNQIDNA 200

Query: 207 GATDVE-IIPLQHAVAADMAALVTRLIDPSTAGGAQADQSYKTTLVAEPRSNSLVLRAAN 265
            A +   +  +  A A+D+A  +      ST      +      +     + ++V++ + 
Sbjct: 201 RADNSPAVFSVSQAKASDIAKALQ-----STFKNLSLEDKSAPLIYGNDATRTIVVKGSA 255

Query: 266 PARLALVRSLVARLDQPSSDKLSGNIHVVYLKNADAASLATTLRAALAGESSGGLSGSGG 325
             R   +R L++ +D P          V +LK ADA  +A      L+G    G+    G
Sbjct: 256 QVREE-IRRLISAMDVPDQQS-----RVFFLKYADAVQMAKLFTNNLSGGFESGMPLITG 309

Query: 326 LGGSSATSPLN---------RAALTPTGTASANNNPSTAAVAASASPSTGG--------- 367
               S  S +          R+     G A+A +  +  A  A  S  +GG         
Sbjct: 310 NSAMSMDSLMGQPSQGNIDLRSTANSDGQAAAASGGTEPAPVAGFSNDSGGLFSDTLLRQ 369

Query: 368 -QIQADPATNSLIITAPEPQYRQLRAVIDQLDSRRAQVYVESLIAEVNAEKAAEFGIQWQ 426
            ++ AD   N+L+I+A     +Q  ++I QLD R  QV VE+++ EV   +    GI W 
Sbjct: 370 IRVHADRDNNALVISASPAAMQQAVSIIQQLDVRHEQVLVEAIVVEVQQAEGLNLGIAW- 428

Query: 427 GALGSSGDRVIGLLGTNFGTGGRNILELAQGNATPSPGMNLGLARRTNGVYV------LG 480
                 G++  G  G+NF   G N+     GN        +   + T G+         G
Sbjct: 429 ------GNKNYG--GSNFN--GVNV-----GNGFNQANPLVDALKGTEGLIAGFYHGSWG 473

Query: 481 FLARFLQENGEGNVLSTPNLLTLDNEEAKIVIGQNVPFVTGQFTNTGSGGNNGSVNPFQT 540
            L   L+ N   N+L+TP+++TLDN  A+  +GQ+VP +TG  T      NN ++  F T
Sbjct: 474 SLFNALESNKRNNILATPSVVTLDNHRAEFNVGQDVPILTGSQTT-----NNDNI--FNT 526

Query: 541 IERKDVGLTLRVKPQISENGTIKMTIYQEVSNVVPSS-VNSTTGLITNKRTIESTVLVED 599
           ++R+ +G+   + P+I+++GTI + I QE+S++  +S VNS  G + N RT+ + V V+D
Sbjct: 527 VQRRTIGIKFSILPRINQSGTILLNISQEISSLSDTSQVNSNLGSVFNIRTVNNVVQVQD 586

Query: 600 GAVVVLGGLLQDEYAGNQEKVPGLGDVPIFGNLFRSETRSRKKTNLMVFLRPVVMRDGRE 659
              VV+GGLL DE      KVP LGD+P  GNLFR  +++  K NLM+F+RP ++R    
Sbjct: 587 DETVVIGGLLDDEKKETANKVPLLGDIPWLGNLFRYTSQNNDKRNLMLFIRPRIIRSNGV 646

Query: 660 TSSLA 664
            S+ A
Sbjct: 647 ESAQA 651