Pairwise Alignments

Query, 494 a.a., Aerotaxis sensor receptor protein from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 511 a.a., PAS domain S-box from Enterobacter asburiae PDN3

 Score =  400 bits (1029), Expect = e-116
 Identities = 217/493 (44%), Positives = 312/493 (63%), Gaps = 4/493 (0%)

Query: 1   MSTTDTQSHITYANDAFVAVSGYSREEIESQPHNLVRHPDMPVEAFKDMWATLQGGEPWT 60
           MSTTDT+SHITYAN AF+  SGY  E +  +PHNL+RHPDMP EAF DMW TLQ GE WT
Sbjct: 21  MSTTDTKSHITYANSAFIEASGYKEEHLLGEPHNLIRHPDMPAEAFGDMWFTLQQGETWT 80

Query: 61  GLVKNRRENGDHYWVRANATPVKRDGVITGYMSVRTKPSQEEVASANALYAKFRNGQAGD 120
           GLVKNRR NGDHYWVRAN TPV + G +TGY+SVR  P++EE+A++  LYAK RN +   
Sbjct: 81  GLVKNRRHNGDHYWVRANVTPVWQGGSLTGYISVRNIPAREEIAASEKLYAKVRNNELKH 140

Query: 121 LGFRKGLISRTGMMRWMSIMQAISAEARSNIGLSIATLLVGTGAWHAGLAGTALAQFLAL 180
             F KGL+ R G+  +MS+ + +S   R ++G++   LL     +   L    L Q  +L
Sbjct: 141 YRFYKGLLVRRGLFSFMSLFKCLSTSKRIHLGIATTALLSCLAVY---LFPDKLVQSGSL 197

Query: 181 LTVSMLLASLWMRYQIYKPLAQLREHALRLATGDFHSATHMNRIDEIGMTMRAVGQLGLM 240
           + +   LA  ++  QI +P+  + +    + +G      H +RID+IG+ MR V Q GL 
Sbjct: 198 VLLFTSLA-YYLHAQIARPVKSIVQQMQSVVSGRKTDYYHFDRIDDIGLMMRLVNQSGLN 256

Query: 241 FRWVIDDVREQVLNAKIAASEIAQGNNDLSSRTEQAAASVEQTAASMEEMSAIVKNNAET 300
              ++DDV  Q+      + ++A+    L +R+E+ A  ++QTA+++EE+++ VK  AET
Sbjct: 257 LNSLVDDVGAQISGIGTISQQVAKEGAALQTRSEETADFLQQTASAVEEIASAVKQTAET 316

Query: 301 SQQAAKLSSSASEAADKGGRAVADVIHTMNDIAHSSNKIGDIIGVIDSIAFQTNILALNA 360
           +++A +++    ++A +G   + + I  M  ++  +++I DII VID IAFQTNILALNA
Sbjct: 317 AKEATEMADRTRDSAHRGEAMMKETIGMMQSVSQDNSQIVDIISVIDRIAFQTNILALNA 376

Query: 361 AVEAARAGAQGRGFAVVAAEVRSLAHRSAEAAKEIKSLIGASVEKVNAGSLMVDGAGRTM 420
           AVEAARAG  GRGFAVVAAEVR+LA  SA AAKEIK+LI  +V  VNAG   V+     +
Sbjct: 377 AVEAARAGEAGRGFAVVAAEVRNLAQHSATAAKEIKALIEKNVASVNAGVEKVEQTETQL 436

Query: 421 KEIVVEVNRVSHMIAEISTATREQSDGITQVATAVGHLDQVTQQNAALVEQSTAASESLR 480
             ++  V RVS +I EI  AT+EQ+  +T +  ++  +  +T  N  +V+  T A+  L 
Sbjct: 437 TVMIDNVLRVSSLIKEIGHATQEQTQALTLINASISRIGAMTHNNTGMVDNVTHAANHLT 496

Query: 481 TQMELLVKAVNVF 493
            +   L +A+ VF
Sbjct: 497 QRTTRLQQAIAVF 509