Pairwise Alignments

Query, 509 a.a., transcription termination factor NusA from Pectobacterium carotovorum WPP14

Subject, 493 a.a., Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  579 bits (1492), Expect = e-170
 Identities = 304/506 (60%), Positives = 386/506 (76%), Gaps = 16/506 (3%)

Query: 1   MNKEILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFR 60
           M+KE+L VVE+VSNEK +P   IFEALE ALATATKK++E E+++RV I+R+TG+++TFR
Sbjct: 1   MSKEVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFR 60

Query: 61  RWLVVNE--VTQPTREITLEAAQFEDPALDVGGYVEDQIESVTFDRITTQTAKQVIVQKV 118
           RW VV +  +  P  E+ ++ AQ + P    G  +E++I+S+ F RI  QTAKQVIVQKV
Sbjct: 61  RWTVVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKV 120

Query: 119 REAERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTSAEAVIGREDMLPREN 178
           REAERA VVD +RE+ GEII+G VKKV RDN+ +++    G+N  AEA++ RED++ RE 
Sbjct: 121 REAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDL----GNN--AEALLAREDIISRET 174

Query: 179 FRPGDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGS 238
           FR G R+R +L  +R E RG QL +SR+ PEML+ELFRIEVPEI E +IE+ AA+RDPGS
Sbjct: 175 FRVGVRVRALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGS 234

Query: 239 RAKIAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPAD 298
           RAKIAV++ DKRIDP GAC+GMRG+RVQAVS ELGGER+DI+LWDDNPAQFVINAM+PA+
Sbjct: 235 RAKIAVRSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAE 294

Query: 299 VVSIVVDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQ 358
           V +I+VDED   MDIAV + NLAQAIGR GQNVRLASQL         W LNVMT  D+Q
Sbjct: 295 VAAIIVDEDAHAMDIAVGADNLAQAIGRGGQNVRLASQL-------TGWTLNVMTESDIQ 347

Query: 359 AKHQAEAHAAIDVFTKHLDIDEEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVEA 418
           AK QAE    +  F + L++DEE A VLV+EGF+SLEE+AYVP++E+L I+G DE+ V  
Sbjct: 348 AKQQAETGDILRNFIEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNE 407

Query: 419 LRERAKAALTTLALAHEESLGDGQPAEDLLGLPGLSRELAFKLAAIGVCTLEDLAEQGVD 478
           LR RAK  L T A+A EE L D  PAEDLL L G+ ++LA +LA  GV T EDLAEQ +D
Sbjct: 408 LRARAKDRLLTKAIATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSID 467

Query: 479 DLTDIEELNDEQAGELIMAARNICWF 504
           DL DI+ ++D++AG+LIMAAR   WF
Sbjct: 468 DLLDIDGIDDDRAGKLIMAAR-AHWF 492