Pairwise Alignments

Query, 509 a.a., transcription termination factor NusA from Pectobacterium carotovorum WPP14

Subject, 417 a.a., transcription termination/antitermination protein NusA from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  198 bits (504), Expect = 3e-55
 Identities = 122/418 (29%), Positives = 230/418 (55%), Gaps = 29/418 (6%)

Query: 16  KALPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRRWLVVNEVTQPTRE- 74
           K + R  +   LE    T  +KK+  + +  + ++ + GD + +R   +V++ ++   + 
Sbjct: 17  KNIDRPTMMRILEDVFRTMIRKKWSTDENFDIILNVEKGDLEIWRNREIVDDNSEDIWDH 76

Query: 75  --ITLEAAQFEDPALDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRE 132
             I+L  A+  +P  +VG  V ++++   F R    TA+Q ++Q++++ E+ ++  ++++
Sbjct: 77  DKISLSDARKIEPDFEVGEEVSEEVKLEDFGRRAVLTARQTLIQRIKDMEKELLFQKYKD 136

Query: 133 QEGEIITGVVKKV-NRDNISLEVRPIDGSNTSAEAVIGREDMLPRENFRPGDRIRGVLYS 191
             GEII+G V +V NR+ + L+           E +I + + +P++ +R GD +R V+  
Sbjct: 137 LVGEIISGEVYQVWNREVLLLD-------QEENELLIPKAEQIPKDRYRKGDVVRAVVQR 189

Query: 192 VRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRI 251
           V       ++ +SR+ P  L  LF  EVPEI + +I IK   R+PG RAK+AV++ D RI
Sbjct: 190 VEIVNGNPKIILSRTSPTFLERLFENEVPEIFDGLIAIKKIVREPGERAKVAVESFDDRI 249

Query: 252 DPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVVSIVVDEDTCTM 311
           DPVGACVGM+G+R+ ++  EL  E ID+I + +N   ++  A++PA + S+ +DE+   +
Sbjct: 250 DPVGACVGMKGSRIHSIVRELENENIDVINYTENLELYIQRALSPAKISSMKIDEENGRV 309

Query: 312 DIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAKHQAEAHAAIDV 371
            + ++   ++ AIG+ GQN++LAS+L+             M ++  +     E   +++ 
Sbjct: 310 SVFLKPDQVSLAIGKGGQNIKLASRLVD------------MEIDVFRESETYEEDISLEE 357

Query: 372 FTKHLDIDEEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVE----ALRERAKA 425
           FT   +I++     L   G  + + +  V  ++LL    L+EET+E     LRE  +A
Sbjct: 358 FTD--EIEDWVIAELRRIGLDTAKSVLAVSKEDLLRRTELEEETIEDVLSILREEFEA 413