Pairwise Alignments

Query, 509 a.a., transcription termination factor NusA from Pectobacterium carotovorum WPP14

Subject, 502 a.a., transcription termination/antitermination protein NusA from Serratia liquefaciens MT49

 Score =  869 bits (2246), Expect = 0.0
 Identities = 448/507 (88%), Positives = 479/507 (94%), Gaps = 6/507 (1%)

Query: 1   MNKEILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFR 60
           MNKEILAVVEAVSNEK+LPREKIFEALETALATATKKKYEQEI+VRVSIDRKTGDFDTFR
Sbjct: 1   MNKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFR 60

Query: 61  RWLVVNEVTQPTREITLEAAQFEDPALDVGGYVEDQIESVTFDRITTQTAKQVIVQKVRE 120
           RW+ V+EVTQPTREITLEAAQ+E+P +++GGY+EDQIESVTFDRITTQTAKQVIVQKVRE
Sbjct: 61  RWVAVDEVTQPTREITLEAAQYEEPGIELGGYIEDQIESVTFDRITTQTAKQVIVQKVRE 120

Query: 121 AERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTSAEAVIGREDMLPRENFR 180
           AERAMVVD FR+ EGEI+TGVVKKVNRD+I+L++    GSN  AEAVIGREDMLPRENFR
Sbjct: 121 AERAMVVDAFRQHEGEIVTGVVKKVNRDSIALDL----GSN--AEAVIGREDMLPRENFR 174

Query: 181 PGDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRA 240
           PGDRIRG+LY+VRPEARGAQLFVSRS  EML ELFRIEVPEIGEEVIEIKAAARDPGSRA
Sbjct: 175 PGDRIRGILYAVRPEARGAQLFVSRSSAEMLKELFRIEVPEIGEEVIEIKAAARDPGSRA 234

Query: 241 KIAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVV 300
           KIAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADV 
Sbjct: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVA 294

Query: 301 SIVVDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAK 360
           SIVVDED CTMDIAVE+SNLAQAIGRNGQNVRLASQLLKQHR DDRWELNVMT +DLQAK
Sbjct: 295 SIVVDEDNCTMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRDDDRWELNVMTADDLQAK 354

Query: 361 HQAEAHAAIDVFTKHLDIDEEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVEALR 420
           HQAEAHAAID FTK+LDIDE+FATVLVEEGFS+LEELAYVPIKELL I+GLDE+ VEALR
Sbjct: 355 HQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDMVEALR 414

Query: 421 ERAKAALTTLALAHEESLGDGQPAEDLLGLPGLSRELAFKLAAIGVCTLEDLAEQGVDDL 480
           +RAKAALTTLALA EESLGD +PA+DLL LPGL R +AFKLAA GVCTLEDLAEQGVDDL
Sbjct: 415 DRAKAALTTLALAQEESLGDQKPADDLLNLPGLERSMAFKLAARGVCTLEDLAEQGVDDL 474

Query: 481 TDIEELNDEQAGELIMAARNICWFGDD 507
            DIE L+DEQAGELIMAARNICWFGD+
Sbjct: 475 ADIEGLSDEQAGELIMAARNICWFGDN 501