Pairwise Alignments

Query, 509 a.a., transcription termination factor NusA from Pectobacterium carotovorum WPP14

Subject, 498 a.a., hypothetical protein from Alteromonas macleodii MIT1002

 Score =  681 bits (1756), Expect = 0.0
 Identities = 351/510 (68%), Positives = 423/510 (82%), Gaps = 16/510 (3%)

Query: 1   MNKEILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFR 60
           MNKEIL V EAVSNEK +PREKIFEALE A+A+ATKKK E EI+VRVSIDR +GDFDTFR
Sbjct: 1   MNKEILLVAEAVSNEKQVPREKIFEALEFAIASATKKKNEGEIEVRVSIDRTSGDFDTFR 60

Query: 61  RWLVV---NEVTQPTREITLEAAQFEDPALDVGGYVEDQIESVTFDRITTQTAKQVIVQK 117
           RWLV+    E   P  EIT+ AAQ ++P + +G YVE+QIES+ FDRITTQTAKQVIVQK
Sbjct: 61  RWLVIPDDQEQENPFAEITISAAQIDEPEIQLGDYVEEQIESIKFDRITTQTAKQVIVQK 120

Query: 118 VREAERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTSAEAVIGREDMLPRE 177
           VREAER  ++ ++ ++ GE++TG VKKVNRDNI +++    G+N  AE VI R+DMLPRE
Sbjct: 121 VREAERQQMIAEYEDKVGELVTGTVKKVNRDNIIIDL----GNN--AEGVIYRDDMLPRE 174

Query: 178 NFRPGDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPG 237
            FRPGDR+RG+LY +RPEARGAQLF+SR+ P+MLVELFR+EVPEI EE +EIK+AARDPG
Sbjct: 175 TFRPGDRVRGLLYVIRPEARGAQLFISRTHPDMLVELFRLEVPEIAEETLEIKSAARDPG 234

Query: 238 SRAKIAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPA 297
           SRAKIAVKTNDKR+DPVGACVGMRG+RVQAVS ELGGER+DI+LWD+NPAQFVINAMAPA
Sbjct: 235 SRAKIAVKTNDKRLDPVGACVGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMAPA 294

Query: 298 DVVSIVVDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDL 357
           +V SIVVDED+ +MD+AVE+ NLAQAIGR+GQNVRLASQL         WELNVMTVEDL
Sbjct: 295 EVASIVVDEDSNSMDVAVEADNLAQAIGRSGQNVRLASQL-------TGWELNVMTVEDL 347

Query: 358 QAKHQAEAHAAIDVFTKHLDIDEEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVE 417
             KH+ E    +D+FT  LDIDEEFA+VLV+EGF++LEE+AYVP  ELLA+EGLDEE VE
Sbjct: 348 NKKHEEENAKVLDLFTAGLDIDEEFASVLVDEGFTTLEEVAYVPASELLAVEGLDEEMVE 407

Query: 418 ALRERAKAALTTLALAHEESLGDGQPAEDLLGLPGLSRELAFKLAAIGVCTLEDLAEQGV 477
            LR RA+A LTT ALA+EESL   +P E LL L G+S+ +A+ LA+ GV  LE+LAEQG 
Sbjct: 408 ELRNRARAFLTTRALANEESLEGAEPTEALLNLEGMSKHVAYVLASRGVTDLEELAEQGT 467

Query: 478 DDLTDIEELNDEQAGELIMAARNICWFGDD 507
           DD++DI+EL++E+AG LIMAARNI WF ++
Sbjct: 468 DDISDIDELDEEKAGALIMAARNIVWFSEE 497