Pairwise Alignments

Query, 388 a.a., tyrosine-type recombinase/integrase from Pectobacterium carotovorum WPP14

Subject, 394 a.a., integrase from Pseudomonas simiae WCS417

 Score =  254 bits (648), Expect = 4e-72
 Identities = 138/391 (35%), Positives = 220/391 (56%), Gaps = 5/391 (1%)

Query: 2   LTDTQCRTAKLKEKLYRLNDFNGLYLEVKPNGKKAWRYRFKLNGKSSMFALGEYPTVKLA 61
           LTDT  + AK +E  Y + D  GL L V P+G K+W +RF   GK    ++G YP   L 
Sbjct: 3   LTDTAAKQAKPRENGYTIPDSLGLSLYVAPSGVKSWHFRFTWLGKQVRISIGTYPETGLK 62

Query: 62  EAREKCEQARKQVADGVSPTQARQLDKIRKVNDASNTFELIAKEWLQMKDWADITKTRRL 121
           EAR + ++AR+ +A+GV P  +R+  K   +     TF  +  EWL  +  +    T R+
Sbjct: 63  EARARRDEAREDIANGVDPRDSRREKKAGMIAAGGQTFRRVYDEWLAFRKGSISPGTYRV 122

Query: 122 --DMLERIVFPAIGKLPIREITPHHILKILQETAKRGAPTVAAEARRTISSVFELAVATL 179
             + +   V P +G   I  I    ++ +++   KRG+   A + R+ +S VF  A+AT 
Sbjct: 123 ISNAMALDVLPTLGDRQIDAIKRADVIALIRRVEKRGSVATAVKVRQRMSQVFSYAIATG 182

Query: 180 RADSDPVWPVRKALPANKTQHKQA--LNPQQIGKLLSCFDNSRGSYQVNYCMWLMWWTLA 237
             +++P   +  A+     QHK    L   ++ ++++   +     Q+   + LM +T +
Sbjct: 183 VIEANPTAEMH-AVTEKMGQHKPHPFLPFSEMPRIMAAIRDCASGQQLKAALMLMIYTAS 241

Query: 238 RPAEVTEAEWAEFDLDNGLWTIPATRMKARREHVIPLPSQAVSMLRTLQGLTGHRQHIFP 297
           RP EV  AEW+E DLD  +WT PA +MK RR+H +PL +QA+++L ++  +TG ++++F 
Sbjct: 242 RPGEVRHAEWSEIDLDAAIWTTPAAKMKMRRDHAVPLSTQAIAILESMLPITGDKRYVFI 301

Query: 298 GRDNPRGPMTSHSLRQLLKSLGWSGTYSPHATRTTGSTRLNEMGYRPDAIEAQLAHADTN 357
            R++   P+ ++    ++ S G +G  SPH  R   ST +N  GY  D IE QLAHAD++
Sbjct: 302 NRNSTTAPIGTNYANNVMDSCGLTGIQSPHGFRHLFSTEMNGRGYNRDWIERQLAHADSS 361

Query: 358 NVRRTYNHATYLDERKVMMQEWADKLEMLTT 388
            +R  YNHATYLD+R+ MMQEWAD +   T+
Sbjct: 362 FIRDVYNHATYLDQRRGMMQEWADLVTPTTS 392