Pairwise Alignments

Query, 393 a.a., outer membrane protein assembly factor BamB from Pectobacterium carotovorum WPP14

Subject, 611 a.a., FOG: WD40-like repeat from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 80.1 bits (196), Expect = 2e-19
 Identities = 82/332 (24%), Positives = 133/332 (40%), Gaps = 29/332 (8%)

Query: 65  PAWQDNRVFAADRRGTVKAMDLSDGKEIWRADLSEKTNFFSRNNPALLSGGVTVSGNHVY 124
           P     +V   +  G V+A+ +  G+  W  D              + S  V    + V 
Sbjct: 296 PLVAKGKVIFGNSVGKVEALSIETGRLEWSYD----------TGAGIFSSPVRYH-DLVI 344

Query: 125 VGSERAQVYALNAEDGTPVWQTKVAGEALSRPVVSDGVVLIHTSNGMLQALNEADGAIKW 184
            G+    +YALN  DG   W+T  +   L  P+V DG V I  S+G  +AL+  DG + W
Sbjct: 345 FGTGDGNIYALNLTDGELEWKTPASAAVLGSPIVEDGKVYIGASDGKFRALDAKDGKVLW 404

Query: 185 SV-NLDMPTLSLRGESAPTTAFGAAIVGGDNGRVNAVMINQGQLIWQQRISQPSGATEID 243
               L+ P +     S P    G  I G  +  + AV    G+L W+         +   
Sbjct: 405 VFGGLEGPVV-----SKPLIYQGKVIFGAWDRHLYAVDRASGKLAWKW-----DNGSANR 454

Query: 244 RLNDVDTTPVVAGEVVYALGYNGNMTALDLRSGQVLWKRELGSVHDFI---IDGDRIYLV 300
             +     PV    VVY +  +  +TALD  SG+ LW+    +V + I    DG  +Y  
Sbjct: 455 MYSPAMCVPVAHEGVVYIVAPDRYITALDAASGEELWRSNEATVRESIGISSDGKWVYGK 514

Query: 301 DQDDRVVALNTNGGVS--LWRQS-DLLHRNLTAPALYNGYLV-VGDTEGYLHWLNTADGR 356
             +D VVA  T    +   WR      + ++ +  + NG  V  G     ++ ++     
Sbjct: 515 TMNDEVVAFETGRDAANLAWRMDCGFGYEHVPSMLIENGGAVYFGTKNSTVYSIDPQTRT 574

Query: 357 FVAQQKVDSSGFLSKPVVASDKLLIQAKNGDV 388
                K+D+S   +  V+    L++   +G V
Sbjct: 575 IHWAHKIDNSMANTVNVIDEHSLVVATMDGKV 606



 Score = 57.4 bits (137), Expect = 1e-12
 Identities = 50/222 (22%), Positives = 91/222 (40%), Gaps = 28/222 (12%)

Query: 144 WQTKVAGEALSRPVVSDGVVLIHTSNGMLQALNEADGAIKWSVNLDMPTLSLRGESAPTT 203
           W        +S P+V+ G V+   S G ++AL+   G ++WS +           S+P  
Sbjct: 284 WSYHADANVISTPLVAKGKVIFGNSVGKVEALSIETGRLEWSYDTGAGIF-----SSPVR 338

Query: 204 AFGAAIVGGDNGRVNAVMINQGQLIWQQRISQPSGATEIDRLNDVDTTPVVAGEVVYALG 263
                I G  +G + A+ +  G+L W+     P+ A  +        +P+V    VY   
Sbjct: 339 YHDLVIFGTGDGNIYALNLTDGELEWK----TPASAAVLG-------SPIVEDGKVYIGA 387

Query: 264 YNGNMTALDLRSGQVLWKRELGSVHDFIIDGDRIY-----LVDQDDRVVALNTNGGVSLW 318
            +G   ALD + G+VLW    G +   ++    IY         D  + A++   G   W
Sbjct: 388 SDGKFRALDAKDGKVLW--VFGGLEGPVVSKPLIYQGKVIFGAWDRHLYAVDRASGKLAW 445

Query: 319 RQSDLLHRNLTAPAL-----YNGYLVVGDTEGYLHWLNTADG 355
           +  +     + +PA+     + G + +   + Y+  L+ A G
Sbjct: 446 KWDNGSANRMYSPAMCVPVAHEGVVYIVAPDRYITALDAASG 487



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 328 LTAPALYNGYLVVGDTEGYLHWLNTADGRFVAQQKVDSSGFLSKPVVASDKLLIQAKNGD 387
           ++ P +  G ++ G++ G +  L+   GR         +G  S PV   D ++    +G+
Sbjct: 293 ISTPLVAKGKVIFGNSVGKVEALSIETGRLEWSYDT-GAGIFSSPVRYHDLVIFGTGDGN 351

Query: 388 VYA 390
           +YA
Sbjct: 352 IYA 354