Pairwise Alignments

Query, 818 a.a., ribonuclease R from Pectobacterium carotovorum WPP14

Subject, 813 a.a., putative enzyme (VIMSS) from Escherichia coli BW25113

 Score = 1249 bits (3233), Expect = 0.0
 Identities = 630/818 (77%), Positives = 699/818 (85%), Gaps = 12/818 (1%)

Query: 1   MSQDPFLEREAEKYESPIPSREYILAHIAKRDTPISREELAADLQLTGEEALEALRRRLR 60
           MSQDPF EREAEKY +PIPSRE+IL H+ KR+ P SR+ELA +L + GEE LE LRRRLR
Sbjct: 1   MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60

Query: 61  AMERDGQLIFTRRQCYALPEKLDLLRGTVIGHRDGFGFLRVEGRKDDLYLSAEEMKRTIH 120
           AMERDGQL+FTRRQCYALPE+LDL++GTVIGHRDG+GFLRVEGRKDDLYLS+E+MK  IH
Sbjct: 61  AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120

Query: 121 GDVALAQPLGADRKGRREGRIVRVLEPRTGQIVGRYFVDAGVGFVVPDDSRLSFDILIPK 180
           GD  LAQPLGADRKGRRE RIVRVL P+T QIVGRYF +AGVGFVVPDDSRLSFDILIP 
Sbjct: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180

Query: 181 EEINGARMGFVVVVELTQRATRRTKAVGKIVEILGDNMGTGLAVDIALRTHDIPHTWPPK 240
           ++I GARMGFVVVVELTQR TRRTKAVGKIVE+LGDNMGTG+AVDIALRTH+IP+ WP  
Sbjct: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240

Query: 241 VEEQVKDLSEEVPEAAKKGRVDLRKLPLVTIDGEDARDFDDAVHCEPKRGGGWRLWVAIA 300
           VE+QV  L EEVPE AK GRVDLR LPLVTIDGEDARDFDDAV+CE KRGGGWRLWVAIA
Sbjct: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300

Query: 301 DVSYYVRPNTPLDHEARARGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360
           DVSYYVRP+TPLD EAR RGTSVYFPSQV+PMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
Sbjct: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360

Query: 361 AQGKLSSYKFYEAVMSSHARLTYTKVWHILQGDAELREHYKPLVGGLEELHRMYKALEHA 420
           ++G+L+ YKFYEAVMSSHARLTYTKVWHILQGD +LRE Y PLV  LEELH +YK L+ A
Sbjct: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420

Query: 421 REVRGGIAFETEEAKFIFNAERRIERVEAVVRNDAHKLIEECMILANISAAKFVEKNEEP 480
           RE RGGI+FE+EEAKFIFNAERRIER+E   RNDAHKLIEECMILANISAA+FVEK +EP
Sbjct: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480

Query: 481 ALFRVHDQPSEDHVLALRSVLGELGLTLKGGMKPQPKDYAELMNELADRPDREMLQTMLL 540
           ALFR+HD+PS + + + RSVL ELGL L GG KP+P+DYAEL+  +ADRPD EMLQTMLL
Sbjct: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540

Query: 541 RSMKQAIYDPENRGHFGLALTSYGHFTSPIRRYPDLSLHRAIKYLLSDR--HE-RWTSTG 597
           RSMKQAIYDPENRGHFGLAL SY HFTSPIRRYPDL+LHRAIKYLL+    H+   T TG
Sbjct: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600

Query: 598 GWHSDINEMLQLGMHCSMTERRADEATRDVADWLKCDFMQDHVGEVFTGIIASVTGFGFF 657
           G+H  + EMLQLG HCSM ERRADEATRDVADWLKCDFM D VG VF G+I+SVTGFGFF
Sbjct: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660

Query: 658 VRLKDLFIDGLVHVSTLDNDYYRYDNIGQRLIGESRGQVYRLGDEVEIRVEAVHMDERNI 717
           VRL DLFIDGLVHVS+LDNDYYR+D +GQRL+GES GQ YRLGD VE+RVEAV+MDER I
Sbjct: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720

Query: 718 DFALISSTRKVRGEGKTARDRVKKPDSREAKPARRRRSASKAPANFEPDAAFRKEGDSSA 777
           DF+LISS R  R  GKTAR++ KK D+   K   +RR   K   NFEPD+AFR E     
Sbjct: 721 DFSLISSERAPRNVGKTAREKAKKGDA--GKKGGKRRQVGK-KVNFEPDSAFRGE----- 772

Query: 778 KSDKSKAKPKKNRDKAKKNAEKTRKIAAATKAKRAKKK 815
           K  K KA  KK+  KAKK + KT+KIAAATKAKRA KK
Sbjct: 773 KKTKPKA-AKKDARKAKKPSAKTQKIAAATKAKRAAKK 809