Pairwise Alignments

Query, 516 a.a., ABC transporter substrate-binding protein from Pectobacterium carotovorum WPP14

Subject, 523 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  239 bits (609), Expect = 2e-67
 Identities = 170/519 (32%), Positives = 263/519 (50%), Gaps = 27/519 (5%)

Query: 6   LALLFTVLFSSSPLVYSADLNIGLASSTTSMDPQFYVSGANSAMARNI----FDGLVVQD 61
           + L F VLF++  L            ++ S  P + +   N+A+A  I    ++ LV  +
Sbjct: 1   MKLPFAVLFAAMALGAGGAHAKTFKWTSASDIPTWDIHSQNNALANGIHASVYESLVYYN 60

Query: 62  EKQ-QIAPALATSWKVIDDKTWEFVLRPGVKFHDGSDFTAKDVIASIKRVALASKNSPSS 120
            K  +  P LAT+WK +        LR GVKFHDGS F+A D + SI+R    + N    
Sbjct: 61  SKTFKPEPVLATAWKQVTPTQLRMNLRTGVKFHDGSAFSADDAVFSIERAMTKTSN---- 116

Query: 121 YAPYVSDIAEVIEVNPLTVRIKTKEASPLLLNNLSRISILPARL---------ENVPTET 171
           +  Y   I  V++V+  T+ I TK+ +P+LLN L+ + ++             +++ T+ 
Sbjct: 117 FGIYAQGIDRVVKVDANTIDIFTKDPNPVLLNQLTELRMMSKAWAEKNNSTMPKDIKTQD 176

Query: 172 LN-SGKDVIGTGPFKFVSWVPDDRVVLSRNDDYWGGKAEWDNVTVRVF---KNSSARVAA 227
            N + ++  GTGPF    W PD ++V++RN ++WG K+E  NVT  ++   K  + R+AA
Sbjct: 177 ENFAHRNANGTGPFVLKEWQPDQKLVVTRNPNWWG-KSE-GNVTEVIYTPVKAVATRMAA 234

Query: 228 VLSGDVDMIENVPTADSSNIEKNQQLKTISTPGNRVIYLHMDQQREESPFAKGPDGKNPL 287
           +LSG+VD++ +    D + +   Q LK I    NR I+  MDQ R+E P      GKNPL
Sbjct: 235 LLSGEVDLVLDPSPQDLARVRGEQNLKVIDGVENRTIFFGMDQFRDELP-GSNIKGKNPL 293

Query: 288 LKKEVRQAMSLAINRQAIVDRVMEGQAVVASQLVPKGYPGYSASI-PAPVYNPEKAKQEL 346
             + VR+A+  AI+   I    + G       LV     G++ ++     ++   A++ L
Sbjct: 294 KDQRVRKALYQAIDMNTIARVSLRGLGQPTGALVAPQVNGWTEAVHKRHPFDVAAAQKLL 353

Query: 347 AAAGYPDGFTLTFHASNDRYPNDSKIAQAIGQMFTRAGIKTEVVTMPGSVYFSRASRLEF 406
           A AGY DGF + F   N+RY ND +I QA+  M+ R G+K ++ T+P   YF    R E 
Sbjct: 354 ADAGYKDGFEVDFACPNNRYINDEQICQAVTAMWARIGVKAKLRTLPLVTYFPMIQRYEA 413

Query: 407 SLIMGGAAIETGEASGVLGPLLETFGPNA-GQGNRGRYSNPVFDKTLNEARATLDETKRD 465
           S+ M G  + T +A   L  L+ + G    G  N GRYSNP  D  +   +   D   R 
Sbjct: 414 SIYMLGWGVPTFDALYSLQSLVRSVGAGGDGNYNVGRYSNPQMDALVERTKKETDLKLRT 473

Query: 466 ALLAEAMNIGMNDLGVIPVMFLSNTWAMKKQYTYVGRSD 504
            LL +A+ +   D+  IP+      WAMKK    V R+D
Sbjct: 474 ELLTKALALQNEDVAHIPLHNQIIPWAMKKNIEVVHRAD 512