Pairwise Alignments
Query, 2380 a.a., Photosystem I assembly protein Ycf3 from Methylophilus sp. DMC18
Subject, 683 a.a., hypothetical protein from Azospirillum sp. SherDot2
Score = 169 bits (429), Expect = 1e-45
Identities = 165/663 (24%), Positives = 271/663 (40%), Gaps = 51/663 (7%)
Query: 189 PDNAVLAYNMAQVLFVLGNLDEALVHFQRAIDLNQTYFDALHQYGHCLRQKNRFKEAEQV 248
P+ AV N+ + L G L EA H ++A+D + + +G L+ R EA
Sbjct: 49 PEEAVARSNLGETLRRQGRLAEAEAHHRKALDWLPDFGGNHYNWGVTLQALGRPAEAAAA 108
Query: 249 WLQARVLNPESWQLLNDLAQLYKQLQQPLEYEACAKAIMQVKAPEIEELNNFTSTLINQQ 308
+ +A L P + L ++L + E EA + +++ + + ++
Sbjct: 109 YGEAARLMPGFAPAPCNQGVLLRELGRLDEAEAALRRALELDHALVPARLALAALHRDRG 168
Query: 309 LLTEAERYCKQAMSLGIEDPFTYCNMALLLYYKQEYAQSLEYYEKALQLKPDCAAFWSNY 368
L A + +SL + N+AL L + + E D AA +
Sbjct: 169 DLDRAAAGFRACLSLMPDLAEGQANLALALKERGQRGGPAE----------DAAASIVGF 218
Query: 369 SVSLRLVGEVERARQALEKAIALDPEYLDSYINLGSAYLEQGDVKLAVETYVKLIARAPH 428
+LR+ + A L + + +L + LG+ D + R
Sbjct: 219 DRALRI--GLPDAGGVLAQLVQ-QRRHLCRWAGLGALSARLVD-----------LVREGR 264
Query: 429 LDKAYRNLLYTNSFANELSPKEHLKYARACGEQFMA-KAAPFKNWLVNAQDQ--RLRIGL 485
+AY ++ L RAC E++ K + D+ +LRIG
Sbjct: 265 TQQAYPWIVLGEGAGPALE--------RACAERYSGWKTRGIRPGFPKRTDRGAKLRIGY 316
Query: 486 VSADLRSHPVGYFLEHWLKHIDAGKTEIYAYSADGREDN--YSQVLKKHCTQWRSLAGMN 543
+S D H + ++ D + EI S G +D + L + L+ +
Sbjct: 317 LSTDFHEHATAVLIAELIERHDRDRFEIIGCSY-GPDDGGPLRKRLVAGFDRLLDLSALT 375
Query: 544 DARAASLIREDGIHILLDLSGYTADSRVSLFAWRPAPVQASWLGYWDTTGLPTMDAVIAD 603
D AA LI E G+ IL+DL G+T ++R + A+RPAPVQA WLGY T G +D VIAD
Sbjct: 376 DEAAARLIHEAGVDILVDLKGHTQNARPGIAAYRPAPVQAQWLGYPGTLGSTAIDYVIAD 435
Query: 604 PVSVPAGSEGQFTESVVKLPHTRLCFSAPDSNEQVNALPALQN------GYVTFGCFQKY 657
V PA + + E +V LP + + D + P + G+V F F
Sbjct: 436 AVVAPADHQRFYCERIVHLPDS---YQPNDRQRSIGPTPGRADCGLPAEGFV-FCAFNAP 491
Query: 658 SKVSDEVLAVWAQVFLALPEAKLYWQCKAFQDDQIQAEALARLQQAGIQPEQCVLMRPTA 717
K+ ++ W ++ +P + L W ++ A + G+ PE+ +
Sbjct: 492 YKIGPDLFGRWCRILQRVPGSVL-WLLDG--PAEVAANLRGAAAERGVAPERLIFAPRLP 548
Query: 718 RDAYFKNYHAVDMILDSFPFNGGTTTCEALWMGVPTLTMPGETMISRQGASMMTSAGLPE 777
A+ + D+ LDS P TT +ALW G+P L++PG + R AS++ + GLP+
Sbjct: 549 GPAHLARHRLADLFLDSAPVGAHTTASDALWAGLPVLSVPGRSFAGRVAASLLRAVGLPK 608
Query: 778 WVAEDKKAFVQKAIQFAADLPALANLRAGLRAQVMRSPLMDGERFARDMEQLLWNVWSER 837
D A+ A + A LA L+ L +PL D +RFAR +E +W
Sbjct: 609 LAVADWDAYEATAQRLAEQPAELAALKLRLEQACATAPLFDTDRFARSIESAFATMWDIH 668
Query: 838 VTG 840
G
Sbjct: 669 AAG 671
Score = 153 bits (386), Expect = 1e-40
Identities = 143/544 (26%), Positives = 230/544 (42%), Gaps = 52/544 (9%)
Query: 1287 DASAAAKQALTLNAQDPQEHCYYGIVLKAKGDLPGAATAFQQAIALKSDYAAAYNNLGTV 1346
+A AA ++AL L+ + + +GDL AA F+ ++L D A NL
Sbjct: 138 EAEAALRRALELDHALVPARLALAALHRDRGDLDRAAAGFRACLSLMPDLAEGQANLALA 197
Query: 1347 LKDLGQ-------VETAIEHFKCALALQ-PNYADCFSNLLFCMTH-----------AEHI 1387
LK+ GQ +I F AL + P+ + L+ H A +
Sbjct: 198 LKERGQRGGPAEDAAASIVGFDRALRIGLPDAGGVLAQLVQQRRHLCRWAGLGALSARLV 257
Query: 1388 DNAALMQAHQAY-----------------ADLYEAPLKAAWLPHQNTR-DVHRPLNIGWV 1429
D + QAY A+ Y P R D L IG++
Sbjct: 258 DLVREGRTQQAYPWIVLGEGAGPALERACAERYSGWKTRGIRPGFPKRTDRGAKLRIGYL 317
Query: 1430 SADFRAHSVAHFMLPLLNELAKETSLRLVAYANQPLVDNVTTQMQGYFSTWYEVSSWSDQ 1489
S DF H+ A + L+ ++ + + ++ F ++S+ +D+
Sbjct: 318 STDFHEHATAVLIAELIERHDRDRFEIIGCSYGPDDGGPLRKRLVAGFDRLLDLSALTDE 377
Query: 1490 ALAEQIRDDGIDILIDLSGHTSGNRLLTFARKPAPVQVSWLGYLNTTGLSSMDYYLADPY 1549
A A I + G+DIL+DL GHT R A +PAPVQ WLGY T G +++DY +AD
Sbjct: 378 AAARLIHEAGVDILVDLKGHTQNARPGIAAYRPAPVQAQWLGYPGTLGSTAIDYVIADAV 437
Query: 1550 LLPAGQFDDQ--FTEKLVQLPVNATFIPYEQAPEVNALPALNN------GYVTFACFNRV 1601
+ PA D Q + E++V LP ++ P ++ + P + G+V F FN
Sbjct: 438 VAPA---DHQRFYCERIVHLP--DSYQPNDRQRSIGPTPGRADCGLPAEGFV-FCAFNAP 491
Query: 1602 LKITQATVQQWAALMQALPDSRLVIGGVGEGESTQHLQTWFAEAGIAANRIRYYARTDMA 1661
KI +W ++Q +P S L + G E +L+ AE G+A R+ + R
Sbjct: 492 YKIGPDLFGRWCRILQRVPGSVLWLLD-GPAEVAANLRGAAAERGVAPERLIFAPRLPGP 550
Query: 1662 SYLGYYHEVDICLDTFPSNGVTTTAHALWMGVPTLCVAGDRLASRGAMALMQHLGLMQFI 1721
++L + D+ LD+ P TT + ALW G+P L V G A R A +L++ +GL +
Sbjct: 551 AHLARHRLADLFLDSAPVGAHTTASDALWAGLPVLSVPGRSFAGRVAASLLRAVGLPKLA 610
Query: 1722 ASDHDSLIKQTLDLCADFTKLAACRAHMREHFSNSLLAKPGLQAEALRQMLFQMWQRWCA 1781
+D D+ L +LAA + + + + + L A ++ MW A
Sbjct: 611 VADWDAYEATAQRLAEQPAELAALKLRLEQACATAPLFDTDRFARSIESAFATMWDIHAA 670
Query: 1782 QQAP 1785
+ P
Sbjct: 671 GEPP 674
Score = 55.1 bits (131), Expect = 4e-11
Identities = 48/150 (32%), Positives = 64/150 (42%)
Query: 53 PKEGIAWKILGGLLQQRGDLQGAGEALAQAVKLLKKDAEVFLNAANVAAQLGDVTLATKH 112
P+E +A LG L+++G L A +A+ L N LG A
Sbjct: 49 PEEAVARSNLGETLRRQGRLAEAEAHHRKALDWLPDFGGNHYNWGVTLQALGRPAEAAAA 108
Query: 113 YRQAIRLNPSMTRAYANLASLLKEAGQQKEAEKLLRTALQLNKHDALVLFDLAALLHESG 172
Y +A RL P A N LL+E G+ EAE LR AL+L+ LAAL + G
Sbjct: 109 YGEAARLMPGFAPAPCNQGVLLRELGRLDEAEAALRRALELDHALVPARLALAALHRDRG 168
Query: 173 KSLEAVQYYRQALEIEPDNAVLAYNMAQVL 202
A +R L + PD A N+A L
Sbjct: 169 DLDRAAAGFRACLSLMPDLAEGQANLALAL 198
Score = 42.0 bits (97), Expect = 3e-07
Identities = 37/134 (27%), Positives = 54/134 (40%), Gaps = 4/134 (2%)
Query: 99 VAAQLGDVTLATKHYRQAIRLN----PSMTRAYANLASLLKEAGQQKEAEKLLRTALQLN 154
+A + GD L + + L P A +NL L+ G+ EAE R AL
Sbjct: 23 LAGKAGDAALLSALFAALDTLGQAGTPEEAVARSNLGETLRRQGRLAEAEAHHRKALDWL 82
Query: 155 KHDALVLFDLAALLHESGKSLEAVQYYRQALEIEPDNAVLAYNMAQVLFVLGNLDEALVH 214
++ L G+ EA Y +A + P A N +L LG LDEA
Sbjct: 83 PDFGGNHYNWGVTLQALGRPAEAAAAYGEAARLMPGFAPAPCNQGVLLRELGRLDEAEAA 142
Query: 215 FQRAIDLNQTYFDA 228
+RA++L+ A
Sbjct: 143 LRRALELDHALVPA 156
Score = 39.7 bits (91), Expect = 2e-06
Identities = 26/95 (27%), Positives = 45/95 (47%)
Query: 1287 DASAAAKQALTLNAQDPQEHCYYGIVLKAKGDLPGAATAFQQAIALKSDYAAAYNNLGTV 1346
+A+AA +A L C G++L+ G L A A ++A+ L A L +
Sbjct: 104 EAAAAYGEAARLMPGFAPAPCNQGVLLRELGRLDEAEAALRRALELDHALVPARLALAAL 163
Query: 1347 LKDLGQVETAIEHFKCALALQPNYADCFSNLLFCM 1381
+D G ++ A F+ L+L P+ A+ +NL +
Sbjct: 164 HRDRGDLDRAAAGFRACLSLMPDLAEGQANLALAL 198
Score = 39.7 bits (91), Expect = 2e-06
Identities = 27/78 (34%), Positives = 38/78 (48%)
Query: 63 GGLLQQRGDLQGAGEALAQAVKLLKKDAEVFLNAANVAAQLGDVTLATKHYRQAIRLNPS 122
G LL++ G L A AL +A++L L A + GD+ A +R + L P
Sbjct: 127 GVLLRELGRLDEAEAALRRALELDHALVPARLALAALHRDRGDLDRAAAGFRACLSLMPD 186
Query: 123 MTRAYANLASLLKEAGQQ 140
+ ANLA LKE GQ+
Sbjct: 187 LAEGQANLALALKERGQR 204
Score = 38.1 bits (87), Expect = 5e-06
Identities = 30/100 (30%), Positives = 43/100 (43%)
Query: 157 DALVLFDLAALLHESGKSLEAVQYYRQALEIEPDNAVLAYNMAQVLFVLGNLDEALVHFQ 216
+A+ +L L G+ EA ++R+AL+ PD YN L LG EA +
Sbjct: 51 EAVARSNLGETLRRQGRLAEAEAHHRKALDWLPDFGGNHYNWGVTLQALGRPAEAAAAYG 110
Query: 217 RAIDLNQTYFDALHQYGHCLRQKNRFKEAEQVWLQARVLN 256
A L + A G LR+ R EAE +A L+
Sbjct: 111 EAARLMPGFAPAPCNQGVLLRELGRLDEAEAALRRALELD 150
Score = 31.6 bits (70), Expect = 5e-04
Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 1310 GIVLKAKGDLPGAATAFQQAIALKSDYAAAYNNLGTVLKDLGQVETAIEHFKCALALQPN 1369
G L+ +G L A ++A+ D+ + N G L+ LG+ A + A L P
Sbjct: 59 GETLRRQGRLAEAEAHHRKALDWLPDFGGNHYNWGVTLQALGRPAEAAAAYGEAARLMPG 118
Query: 1370 YADCFSNLLFCMTHAEHID--NAALMQAHQAYADLYEAPLKAAWLPHQNTRDVHRPLNIG 1427
+A N + +D AAL +A + L A L A L H++ D+ R
Sbjct: 119 FAPAPCNQGVLLRELGRLDEAEAALRRALELDHALVPARLALAAL-HRDRGDLDR----- 172
Query: 1428 WVSADFRA 1435
+A FRA
Sbjct: 173 -AAAGFRA 179