Pairwise Alignments
Query, 2380 a.a., Photosystem I assembly protein Ycf3 from Methylophilus sp. DMC18
Subject, 881 a.a., Beta-barrel assembly-enhancing protease from Azospirillum sp. SherDot2
Score = 257 bits (657), Expect = 5e-72
Identities = 226/823 (27%), Positives = 346/823 (42%), Gaps = 67/823 (8%)
Query: 79 LAQAVKLLKKDAEVFLNAANVAAQLGDVTLATKHYRQAIRLNPSMTRAYANLASLLKEAG 138
L Q + KD EV+L+ A + A Y A+R+ P+ A+ LA L G
Sbjct: 56 LFQKSLAIAKDLEVYLDFGAAMAGMARWDAAATVYAAALRVAPASADAHYGLAMALHRQG 115
Query: 139 QQKEAEKLLRTALQLNKHDALVLFDLAALLHESGKSLEAVQYYRQALEIEPDNAVLAYNM 198
+ ++AE R L H V +L L + G+ EA +R+A I+P +A +
Sbjct: 116 RPQDAEPHYRKVLAAFSHLGEVHNNLGVALQDLGRFAEAAAAHREAARIDPTDAASWSKL 175
Query: 199 AQVLFVLGNLDEALVHFQRAIDLNQTYFDALHQYGHCLRQKNRFKEAEQVWLQARVLNPE 258
L +G EA F++A+ L D H L R EA A L+P
Sbjct: 176 GVALHAIGQGAEAEAAFRKALGLAPQDADCWHNLSGLLDADGRPAEALAAGRLAVALDPG 235
Query: 259 S---WQLLNDLAQLYKQLQQPLEYEACAKAIMQVKAPEIEELNNFTSTLINQQLLTEAER 315
S W L + A + L++ + A A ++ +P NN S L EA
Sbjct: 236 SARNWLALGNAAGAARSLEEAWRATSAA-ARLEPSSPAAR--NNLASALQELGRWREAVA 292
Query: 316 YCKQAMSLGIEDPFTYCNMALLLYYKQEYAQSLEYYEKALQLKPDCAAFWSNYSVSLRLV 375
+ A+ L + P N+A L +E +L L +P W L
Sbjct: 293 EYRAALELQPDFPVAEINLAQALSGLREADGALAVLRALLARQPANGEAWRRLGSVLAEA 352
Query: 376 GEVERARQALEKAIALDPEYLDSYINLGSAYLEQGDVKLAVETYVKLIARAPHLDKAYRN 435
+ A L KA+AL P D+ +L A G + + +++ P A
Sbjct: 353 VRPDAAVAVLRKAVALAPGEPDAQADLAMAAAMAGWSTQSADACRRVLRLVPGHAAALGQ 412
Query: 436 LLYTNSF---------------------ANELSPKEHLKYARACGEQFMAKAAPFKNWLV 474
L++ A +SP + L A +Q A A W V
Sbjct: 413 LVHQQRLLCDWRDLDGLEVELLRQVRAGAEGVSPFDVLSCASTLADQQSAAA----RWAV 468
Query: 475 N-------------------AQDQRLRIGLVSADLRSHPVGYFLEHWLKHIDAGKTEIYA 515
A D RLRIG +S+D R H +G+ + L+ D + + A
Sbjct: 469 AKARGTGTVTRPAATAVIAAAGDGRLRIGYLSSDFREHAMGHLMVDALETHDRSRFAVTA 528
Query: 516 YSADGREDNYS--QVLKKHCTQWRSLAGMNDARAASLIREDGIHILLDLSGYTADSRVSL 573
YS G +D + Q ++ ++ L DA AA I DGI IL+DL+G+T+ SR S+
Sbjct: 529 YST-GLDDGSALRQRFQRGIERFVDLRRHTDADAARTIAADGIDILVDLTGFTSFSRTSI 587
Query: 574 FAWRPAPVQASWLGYWDTTGLPTMDAVIADPVSVPAGSEGQFTESVVKLPHTRLCFSAPD 633
A RPAPVQ +WLGY T G +D ++ADP + G +G F+E VV+LP C+ D
Sbjct: 588 LAARPAPVQVNWLGYPGTLGAGYVDYIVADPTVIAPGEDGFFSERVVRLPD---CYQPND 644
Query: 634 SNEQV-NALPAL------QNGYVTFGCFQKYSKVSDEVLAVWAQVFLALPEAKLYWQCKA 686
+ A P ++G+V F CF K++ + WA++ A+P + L+
Sbjct: 645 RRRAIAEATPTRRDCGLPEDGFV-FCCFNSAYKLTPALFDGWARILAAVPGSVLWLYAG- 702
Query: 687 FQDDQIQAEALARLQQAGIQPEQCVLMRPTARDAYFKNYHAVDMILDSFPFNGGTTTCEA 746
+ Q+ + G+ P + V +P + + D+ LD+ P+N TT +A
Sbjct: 703 --NPQVAVNLRREGEARGLAPHRLVFAQPLPHAGHLARHRLADLFLDTLPYNAHTTASDA 760
Query: 747 LWMGVPTLTMPGETMISRQGASMMTSAGLPEWVAEDKKAFVQKAIQFAADLPALANLRAG 806
LW G+P LT G T R AS++ +AGLPE + + ++A+ +A+ A L +LR
Sbjct: 761 LWAGLPVLTRRGTTFAGRVAASLLRAAGLPELIVDGQEAYEAEAVALARSPGRLRDLRQR 820
Query: 807 LRAQVMRSPLMDGERFARDMEQLLWNVWSERVTGVADALVTKT 849
L PL D RF R +E +W G A +T T
Sbjct: 821 LALNRPVCPLFDTPRFTRHLEAAYRAMWDIHRAGGAPRPITVT 863
Score = 179 bits (455), Expect = 1e-48
Identities = 183/690 (26%), Positives = 294/690 (42%), Gaps = 76/690 (11%)
Query: 1095 AELGAALEEVFTLALQHQQAGDLQTATQLYQEILAVAPQSAPAWFNLGLIAWAQGHQQEA 1154
++LG AL + G A +++ L +APQ A W NL + A G EA
Sbjct: 173 SKLGVALHAI----------GQGAEAEAAFRKALGLAPQDADCWHNLSGLLDADGRPAEA 222
Query: 1155 VACFAQAHAAQPAEWEYLQHYLVAMHATASADILA----ATFEQAMALPQHAEAVHQLAE 1210
+A A A P +++L +A +A L AT A P A + LA
Sbjct: 223 LAAGRLAVALDPGS---ARNWLALGNAAGAARSLEEAWRATSAAARLEPSSPAARNNLAS 279
Query: 1211 ALKMPGFTRQSVQHAQASSQDAAMQPDASQQQALLTAFEQQQYGQMEQALHTYLGQYPQW 1270
AL+ G R++V +A+ + P A A + ++ G + L L + P
Sbjct: 280 ALQELGRWREAVAEYRAALELQPDFPVAEINLAQALSGLREADGALA-VLRALLARQPAN 338
Query: 1271 LAGWKMLADVLM--LQKKDASAAAKQALTLNAQDPQEHCYYGIVLKAKGDLPGAATAFQQ 1328
W+ L VL ++ A A ++A+ L +P + G +A A ++
Sbjct: 339 GEAWRRLGSVLAEAVRPDAAVAVLRKAVALAPGEPDAQADLAMAAAMAGWSTQSADACRR 398
Query: 1329 AIALKSDYAAAYNNLGTVLK------DLGQVETAIEHFKCALALQPNYADCFSNLLFCMT 1382
+ L +AAA L + DL +E + L
Sbjct: 399 VLRLVPGHAAALGQLVHQQRLLCDWRDLDGLEVEL-------------------LRQVRA 439
Query: 1383 HAEHIDNAALMQAHQAYADLYEAPLKAAWLPHQNTRDVHRP-------------LNIGWV 1429
AE + ++ AD A + A + T V RP L IG++
Sbjct: 440 GAEGVSPFDVLSCASTLADQQSAAARWAVAKARGTGTVTRPAATAVIAAAGDGRLRIGYL 499
Query: 1430 SADFRAHSVAHFMLPLLNELAKETSLRLVAYANQPLVDNVTTQMQGY---FSTWYEVSSW 1486
S+DFR H++ H M+ L E + + AY+ +D+ + Q + + ++
Sbjct: 500 SSDFREHAMGHLMVDAL-ETHDRSRFAVTAYSTG--LDDGSALRQRFQRGIERFVDLRRH 556
Query: 1487 SDQALAEQIRDDGIDILIDLSGHTSGNRLLTFARKPAPVQVSWLGYLNTTGLSSMDYYLA 1546
+D A I DGIDIL+DL+G TS +R A +PAPVQV+WLGY T G +DY +A
Sbjct: 557 TDADAARTIAADGIDILVDLTGFTSFSRTSILAARPAPVQVNWLGYPGTLGAGYVDYIVA 616
Query: 1547 DPYLLPAGQFDDQFTEKLVQLPVNATFIPYEQAPEV-NALPAL------NNGYVTFACFN 1599
DP ++ G+ D F+E++V+LP + P ++ + A P +G+V F CFN
Sbjct: 617 DPTVIAPGE-DGFFSERVVRLP--DCYQPNDRRRAIAEATPTRRDCGLPEDGFV-FCCFN 672
Query: 1600 RVLKITQATVQQWAALMQALPDSRLVIGGVGEGESTQHLQTWFAEAGIAANRIRYYARTD 1659
K+T A WA ++ A+P S L + G + +L+ G+A +R+ +
Sbjct: 673 SAYKLTPALFDGWARILAAVPGSVLWL-YAGNPQVAVNLRREGEARGLAPHRLVFAQPLP 731
Query: 1660 MASYLGYYHEVDICLDTFPSNGVTTTAHALWMGVPTLCVAGDRLASRGAMALMQHLGLMQ 1719
A +L + D+ LDT P N TT + ALW G+P L G A R A +L++ GL +
Sbjct: 732 HAGHLARHRLADLFLDTLPYNAHTTASDALWAGLPVLTRRGTTFAGRVAASLLRAAGLPE 791
Query: 1720 FIASDHDSLIKQTLDLCADFTKLAACRAHM 1749
I ++ + + L +L R +
Sbjct: 792 LIVDGQEAYEAEAVALARSPGRLRDLRQRL 821
Score = 70.5 bits (171), Expect = 1e-15
Identities = 81/322 (25%), Positives = 126/322 (39%), Gaps = 37/322 (11%)
Query: 1105 FTLALQHQQAGDLQTATQLYQEILAVAPQSAPAWFNLGLIAWAQGHQQEAVACFAQAHAA 1164
F + + AG L+ A Y ++L P++ A LG++ G+ ++AV F Q A
Sbjct: 4 FARGVAAENAGRLEEARARYLDVLRAEPRNPAALHRLGVVELRLGNPRDAVVLF-QKSLA 62
Query: 1165 QPAEWEYLQHYLVAMHATASADILAATFEQAMAL-PQHAEAVHQLAEALKMPGFTRQSVQ 1223
+ E + AM A D A + A+ + P A+A + LA AL G + +
Sbjct: 63 IAKDLEVYLDFGAAMAGMARWDAAATVYAAALRVAPASADAHYGLAMALHRQGRPQDAEP 122
Query: 1224 H-------------------------------AQASSQDAAMQP-DASQQQALLTAFEQ- 1250
H A A + A + P DA+ L A
Sbjct: 123 HYRKVLAAFSHLGEVHNNLGVALQDLGRFAEAAAAHREAARIDPTDAASWSKLGVALHAI 182
Query: 1251 QQYGQMEQALHTYLGQYPQWLAGWKMLADVLMLQKK--DASAAAKQALTLNAQDPQEHCY 1308
Q + E A LG PQ W L+ +L + +A AA + A+ L+ +
Sbjct: 183 GQGAEAEAAFRKALGLAPQDADCWHNLSGLLDADGRPAEALAAGRLAVALDPGSARNWLA 242
Query: 1309 YGIVLKAKGDLPGAATAFQQAIALKSDYAAAYNNLGTVLKDLGQVETAIEHFKCALALQP 1368
G A L A A A L+ AA NNL + L++LG+ A+ ++ AL LQP
Sbjct: 243 LGNAAGAARSLEEAWRATSAAARLEPSSPAARNNLASALQELGRWREAVAEYRAALELQP 302
Query: 1369 NYADCFSNLLFCMTHAEHIDNA 1390
++ NL ++ D A
Sbjct: 303 DFPVAEINLAQALSGLREADGA 324
Score = 70.1 bits (170), Expect = 2e-15
Identities = 62/215 (28%), Positives = 90/215 (41%)
Query: 53 PKEGIAWKILGGLLQQRGDLQGAGEALAQAVKLLKKDAEVFLNAANVAAQLGDVTLATKH 112
P + +W LG L G A A +A+ L +DA+ + N + + G A
Sbjct: 166 PTDAASWSKLGVALHAIGQGAEAEAAFRKALGLAPQDADCWHNLSGLLDADGRPAEALAA 225
Query: 113 YRQAIRLNPSMTRAYANLASLLKEAGQQKEAEKLLRTALQLNKHDALVLFDLAALLHESG 172
R A+ L+P R + L + A +EA + A +L +LA+ L E G
Sbjct: 226 GRLAVALDPGSARNWLALGNAAGAARSLEEAWRATSAAARLEPSSPAARNNLASALQELG 285
Query: 173 KSLEAVQYYRQALEIEPDNAVLAYNMAQVLFVLGNLDEALVHFQRAIDLNQTYFDALHQY 232
+ EAV YR ALE++PD V N+AQ L L D AL + + +A +
Sbjct: 286 RWREAVAEYRAALELQPDFPVAEINLAQALSGLREADGALAVLRALLARQPANGEAWRRL 345
Query: 233 GHCLRQKNRFKEAEQVWLQARVLNPESWQLLNDLA 267
G L + R A V +A L P DLA
Sbjct: 346 GSVLAEAVRPDAAVAVLRKAVALAPGEPDAQADLA 380
Score = 61.6 bits (148), Expect = 5e-13
Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 1/235 (0%)
Query: 171 SGKSLEAVQYYRQALEIEPDNAVLAYNMAQVLFVLGNLDEALVHFQRAIDLNQTYFDALH 230
+G+ EA Y L EP N + + V LGN +A+V FQ+++ + + +
Sbjct: 13 AGRLEEARARYLDVLRAEPRNPAALHRLGVVELRLGNPRDAVVLFQKSLAIAKD-LEVYL 71
Query: 231 QYGHCLRQKNRFKEAEQVWLQARVLNPESWQLLNDLAQLYKQLQQPLEYEACAKAIMQVK 290
+G + R+ A V+ A + P S LA + +P + E + ++
Sbjct: 72 DFGAAMAGMARWDAAATVYAAALRVAPASADAHYGLAMALHRQGRPQDAEPHYRKVLAAF 131
Query: 291 APEIEELNNFTSTLINQQLLTEAERYCKQAMSLGIEDPFTYCNMALLLYYKQEYAQSLEY 350
+ E NN L + EA ++A + D ++ + + L+ + A++
Sbjct: 132 SHLGEVHNNLGVALQDLGRFAEAAAAHREAARIDPTDAASWSKLGVALHAIGQGAEAEAA 191
Query: 351 YEKALQLKPDCAAFWSNYSVSLRLVGEVERARQALEKAIALDPEYLDSYINLGSA 405
+ KAL L P A W N S L G A A A+ALDP +++ LG+A
Sbjct: 192 FRKALGLAPQDADCWHNLSGLLDADGRPAEALAAGRLAVALDPGSARNWLALGNA 246
Score = 43.1 bits (100), Expect = 2e-07
Identities = 43/176 (24%), Positives = 67/176 (38%)
Query: 59 WKILGGLLQQRGDLQGAGEALAQAVKLLKKDAEVFLNAANVAAQLGDVTLATKHYRQAIR 118
W LG L+ A A + A +L N A+ +LG A YR A+
Sbjct: 240 WLALGNAAGAARSLEEAWRATSAAARLEPSSPAARNNLASALQELGRWREAVAEYRAALE 299
Query: 119 LNPSMTRAYANLASLLKEAGQQKEAEKLLRTALQLNKHDALVLFDLAALLHESGKSLEAV 178
L P A NLA L + A +LR L + L ++L E+ + AV
Sbjct: 300 LQPDFPVAEINLAQALSGLREADGALAVLRALLARQPANGEAWRRLGSVLAEAVRPDAAV 359
Query: 179 QYYRQALEIEPDNAVLAYNMAQVLFVLGNLDEALVHFQRAIDLNQTYFDALHQYGH 234
R+A+ + P ++A + G ++ +R + L + AL Q H
Sbjct: 360 AVLRKAVALAPGEPDAQADLAMAAAMAGWSTQSADACRRVLRLVPGHAAALGQLVH 415
Score = 31.2 bits (69), Expect = 8e-04
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 4/126 (3%)
Query: 1286 KDASAAAKQALTLNAQDPQEHCYYGIVLKAKGDLPGAATAFQQAIALKSDYAAAYNNLGT 1345
+DA +++L + A+D + + +G + AAT + A+ + A A+ L
Sbjct: 51 RDAVVLFQKSLAI-AKDLEVYLDFGAAMAGMARWDAAATVYAAALRVAPASADAHYGLAM 109
Query: 1346 VLKDLGQVETAIEHFKCALALQPNYADCFSNLLFCMTHAEHIDNAALMQAHQAYADLYEA 1405
L G+ + A H++ LA + + +NL + AA A D +A
Sbjct: 110 ALHRQGRPQDAEPHYRKVLAAFSHLGEVHNNLGVALQDLGRFAEAAAAHREAARIDPTDA 169
Query: 1406 PLKAAW 1411
A+W
Sbjct: 170 ---ASW 172