Pairwise Alignments

Query, 761 a.a., methyl-accepting chemotaxis protein from Magnetospirillum magneticum AMB-1

Subject, 714 a.a., Methyl-accepting chemotaxis transducer from Pseudomonas putida KT2440

 Score =  159 bits (402), Expect = 5e-43
 Identities = 124/423 (29%), Positives = 212/423 (50%), Gaps = 61/423 (14%)

Query: 336 RALTGAKVIRQAERSGLPVAALAAPIPDYSGKPAAVV-EIVMDSRDYAAEYVEARTNAI- 393
           R L   K+    +R  L V A   PIPD   +P  V+ ++  ++    AE ++   +A+ 
Sbjct: 299 RKLADGKLTTLHDRQRLKVLAAFRPIPD--AQPWGVLLDVPENALTGPAETLKQELDALN 356

Query: 394 -IGAVIILALGLLA-------VWLLARGISLPLQGITRVMHTLAAGDLSVEAPFTH-RGD 444
             G ++ L+LGL A       VWL+ARG++ P+ G+  ++  +A+G+  +    T+ + D
Sbjct: 357 TSGTLLELSLGLAAAIVGLLLVWLMARGVTRPILGVAAMLKDIASGEGDLTRRLTYQKQD 416

Query: 445 EVGEMARAVEVFKRNALDKRRMEDEAQELRRQEDLARAARDEAAA---EHALGVQAKVAS 501
           E+GE+A     F    LDK  ++    E++R    AR   D+++A   E + G++ +   
Sbjct: 417 ELGELAGWFNRF----LDK--LQPTIAEVKRSVQAARGTADQSSAIATETSAGMEQQYRQ 470

Query: 502 VDKATDAIRSTAKAMSQRSERSGSLSLDMGDAAQITSERATVVSEATRQLALSVDEIAHQ 561
           VD+   A           S    + + D+  +A   ++ A    +ATR+    +D     
Sbjct: 471 VDQVATA-----------SHEMSATAQDVARSAAQAAQAARDADQATREGLAVIDRTTSS 519

Query: 562 VSCANDVTQKTVASVEETASQMEGLSTAVRAIGDIVHLISDIASQTNLLALNATIEAARA 621
           +           A++ +T +++EGL+     IG ++ +I  IA QTNLLALNA IEAARA
Sbjct: 520 IGAL-------AANMSDTMAEIEGLAQNSEKIGSVLEVIRSIAEQTNLLALNAAIEAARA 572

Query: 622 GEAGKGFAVVAGEVKHLANQTARATEDISRQVEGIQDST--------------QGMAERI 667
           GEAG+GFAVVA EV++LA +T  + E+  + +E +Q+ T              QG  E++
Sbjct: 573 GEAGRGFAVVADEVRNLAQRTQESVEETRQVIEALQNGTREVVGAMDHSHRQAQGGVEQV 632

Query: 668 GEVVGLIR-------TLDGVSSAIAGAIQQQDAATREIASNVEQVARQADKVSGAVSQLA 720
           G+ V  ++        +  ++  IA A ++Q A   EI SNV  +    + +SG  ++ A
Sbjct: 633 GQAVTALQRIGQAVTVITDMNLQIASAAEEQSAVAEEINSNVATIRDVTESLSGQANESA 692

Query: 721 QAS 723
           + S
Sbjct: 693 RVS 695



 Score = 29.6 bits (65), Expect = 6e-04
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 14/108 (12%)

Query: 665 ERIGEVVGLI-RTLDGVSSAIA----------GAIQQQDAATREIASNVEQVARQADKVS 713
           + +GE+ G   R LD +   IA          G   Q  A   E ++ +EQ  RQ D+V+
Sbjct: 416 DELGELAGWFNRFLDKLQPTIAEVKRSVQAARGTADQSSAIATETSAGMEQQYRQVDQVA 475

Query: 714 GAVSQLAQASAKTCAGTIRVMWSAKGLAQ-TVDGLT--SETESFLGRL 758
            A  +++  +        +   +A+   Q T +GL     T S +G L
Sbjct: 476 TASHEMSATAQDVARSAAQAAQAARDADQATREGLAVIDRTTSSIGAL 523



 Score = 26.9 bits (58), Expect = 0.004
 Identities = 60/278 (21%), Positives = 101/278 (36%), Gaps = 36/278 (12%)

Query: 326 QAVLGEEDWSRAL---TGAKV---IRQAERSGLPVAALAAPIPDYSGKPAAVVEIVMDSR 379
           QA  G  D S A+   T A +    RQ ++       ++A   D +   A   +   D+ 
Sbjct: 444 QAARGTADQSSAIATETSAGMEQQYRQVDQVATASHEMSATAQDVARSAAQAAQAARDAD 503

Query: 380 DYAAEYVEA--RTNAIIGAVIILALGLLAVWLLARGI---SLPLQGITRVMHTLAAGDLS 434
               E +    RT + IGA   LA  +        G+   S  +  +  V+ ++A     
Sbjct: 504 QATREGLAVIDRTTSSIGA---LAANMSDTMAEIEGLAQNSEKIGSVLEVIRSIAEQTNL 560

Query: 435 VEAPFTHRGDEVGEMARAVEVFKRNALDKRRMEDEAQELRRQ--EDLARAARDEAAA-EH 491
           +           GE  R   V      +  +   E+ E  RQ  E L    R+   A +H
Sbjct: 561 LALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQESVEETRQVIEALQNGTREVVGAMDH 620

Query: 492 A-LGVQAKVASVDKATDAIRSTAKAMSQRSERSGSLSLDMGDAAQITSERATVVSEATRQ 550
           +    Q  V  V +A  A++   +A++                  IT     + S A  Q
Sbjct: 621 SHRQAQGGVEQVGQAVTALQRIGQAVTV-----------------ITDMNLQIASAAEEQ 663

Query: 551 LALSVDEIAHQVSCANDVTQKTVASVEETASQMEGLST 588
            A++ +EI   V+   DVT+       E+A   + L++
Sbjct: 664 SAVA-EEINSNVATIRDVTESLSGQANESARVSQSLNS 700