Pairwise Alignments

Query, 311 a.a., tRNA pseudouridine(55) synthase TruB from Magnetospirillum magneticum AMB-1

Subject, 305 a.a., pseudouridine synthase from Pseudomonas simiae WCS417

 Score =  192 bits (489), Expect = 6e-54
 Identities = 113/261 (43%), Positives = 149/261 (57%), Gaps = 4/261 (1%)

Query: 4   KRKGDPVNGWLAIDKPLGIGSTQVVAKVKRLLNAAKVGHGGTLDPLASGILPIALGEATK 63
           KR    V+G + +DKP+G  S   + KV+ LLNA K GH G+LDPLA+G+LP+  GEATK
Sbjct: 5   KRIRRNVSGIILLDKPIGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATK 64

Query: 64  TVQYVMDGSKTYRFQVRWGEATASCDRESEVIETSPHRPTAEAIAAALPAFLGEIDQIPP 123
             QY++D  K Y   ++ G+ T + D E +V++          I A LP F GEI QIPP
Sbjct: 65  FSQYLLDSDKGYETLMQLGKTTTTADAEGDVLQVRDVTVGRADIEAVLPGFRGEISQIPP 124

Query: 124 AYSAIKIDGQRAYDLARAGEEVEIKPRRVAIKSFTLLGQPDADHADFEVHCGKGTYVRSL 183
            YSA+K DGQ  Y LARAGE VE +PR V I    LL   + D A   V C KGTY+R+L
Sbjct: 125 MYSALKRDGQPLYKLARAGEVVEREPRSVTIARLELLA-CEGDTARLAVDCSKGTYIRTL 183

Query: 184 ARDLSLALGTVGHVSVLRRIACGPFNEQNAISLESLEDLSQV---PAPWTFLLPIETALD 240
             D+   LG   +V+ LRR   GPF+    ++LE LE +       A   FL+P ++ L 
Sbjct: 184 VEDIGEKLGCGAYVAELRRTQAGPFSLAQTVTLEELEAVHAEGGNEAVDRFLMPSDSGLL 243

Query: 241 DIPALALTESEARRLQSGNPV 261
           D P L  +E  A    +G PV
Sbjct: 244 DWPLLHFSEHSAFYWLNGQPV 264