Pairwise Alignments

Query, 311 a.a., tRNA pseudouridine(55) synthase TruB from Magnetospirillum magneticum AMB-1

Subject, 305 a.a., tRNA pseudouridine 55 synthase from Pseudomonas putida KT2440

 Score =  189 bits (479), Expect = 9e-53
 Identities = 111/252 (44%), Positives = 145/252 (57%), Gaps = 4/252 (1%)

Query: 4   KRKGDPVNGWLAIDKPLGIGSTQVVAKVKRLLNAAKVGHGGTLDPLASGILPIALGEATK 63
           KR    V+G + +DKPLG  S   + KV+ LLNA K GH G+LDPLA+G+LP+  GEATK
Sbjct: 5   KRIRRNVSGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATK 64

Query: 64  TVQYVMDGSKTYRFQVRWGEATASCDRESEVIETSPHRPTAEAIAAALPAFLGEIDQIPP 123
             QY++D  K Y   ++ G+ T + D E EV++T         I A LP F G I QIPP
Sbjct: 65  FSQYLLDSDKGYETVMQMGQTTNTGDAEGEVLQTRDVTVGRADIEAVLPRFRGPISQIPP 124

Query: 124 AYSAIKIDGQRAYDLARAGEEVEIKPRRVAIKSFTLLGQPDADHADFEVHCGKGTYVRSL 183
            YSA+K DGQ  Y LARAGE VE + R V I    LL + +   A   V C KGTY+R+L
Sbjct: 125 MYSALKRDGQPLYKLARAGEVVEREARSVTINRLELL-ECEGTRARLSVGCSKGTYIRTL 183

Query: 184 ARDLSLALGTVGHVSVLRRIACGPFNEQNAISLESLEDLSQV---PAPWTFLLPIETALD 240
             D+  ALG   +V+ LRR   GPF     ++LE LE         A   FL+P ++ L 
Sbjct: 184 VEDIGEALGCGAYVAELRRTQAGPFALAQTVTLEELEQAHAEGGNEALDRFLMPSDSGLQ 243

Query: 241 DIPALALTESEA 252
           D P ++L+E  A
Sbjct: 244 DWPLVSLSEHSA 255