Pairwise Alignments

Query, 311 a.a., tRNA pseudouridine(55) synthase TruB from Magnetospirillum magneticum AMB-1

Subject, 314 a.a., tRNA pseudouridine synthase B (EC 4.2.1.70) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  190 bits (483), Expect = 3e-53
 Identities = 102/267 (38%), Positives = 157/267 (58%), Gaps = 10/267 (3%)

Query: 4   KRKGDPVNGWLAIDKPLGIGSTQVVAKVKRLLNAAKVGHGGTLDPLASGILPIALGEATK 63
           +R+G  ++G L +DKP G+ S  V+ KVKR+ NA + GH G LDPLA+G+LPI LGEATK
Sbjct: 5   RRRGRDIHGVLLLDKPQGMSSNDVLQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64

Query: 64  TVQYVMDGSKTYRFQVRWGEATASCDRESEVIETSPHRPTAEAIAAALPAFLGEIDQIPP 123
             QY++D  K YR   R G+ T + D + ++++  P   +AE +A+AL  F G+I+QIP 
Sbjct: 65  FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVQERPVTFSAEQLASALETFRGDIEQIPS 124

Query: 124 AYSAIKIDGQRAYDLARAGEEVEIKPRRVAIKSFTLLGQPDADHADFEVHCGKGTYVRSL 183
            YSA+K  G++ Y+ AR G EV  + R + +     + + + +  + EVHC KGTY+R++
Sbjct: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFI-RHEGNELELEVHCSKGTYIRTI 183

Query: 184 ARDLSLALGTVGHVSVLRRIACGPFNEQNAISLESLEDL------SQVPAPW---TFLLP 234
             DL   LG   HV+ LRR+    +     ++LE L+ L        VPA       L+P
Sbjct: 184 IDDLGEKLGCGAHVTYLRRLTVSKYPVDRMVTLEHLQTLVAQAEQQGVPAAQLLDPLLMP 243

Query: 235 IETALDDIPALALTESEARRLQSGNPV 261
           +++   D P + L  + +   ++GNPV
Sbjct: 244 MDSPASDYPVVNLPLTSSVYFKNGNPV 270