Pairwise Alignments

Query, 311 a.a., tRNA pseudouridine(55) synthase TruB from Magnetospirillum magneticum AMB-1

Subject, 314 a.a., tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase from Escherichia coli BL21

 Score =  195 bits (495), Expect = 1e-54
 Identities = 104/270 (38%), Positives = 158/270 (58%), Gaps = 10/270 (3%)

Query: 4   KRKGDPVNGWLAIDKPLGIGSTQVVAKVKRLLNAAKVGHGGTLDPLASGILPIALGEATK 63
           +R+G  +NG L +DKP G+ S   + KVKR+ NA + GH G LDPLA+G+LPI LGEATK
Sbjct: 5   RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64

Query: 64  TVQYVMDGSKTYRFQVRWGEATASCDRESEVIETSPHRPTAEAIAAALPAFLGEIDQIPP 123
             QY++D  K YR   R G+ T + D + +++E  P   +AE +AAAL  F G+I+QIP 
Sbjct: 65  FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPS 124

Query: 124 AYSAIKIDGQRAYDLARAGEEVEIKPRRVAIKSFTLLGQPDADHADFEVHCGKGTYVRSL 183
            YSA+K  G++ Y+ AR G EV  + R + +     + + + +  + E+HC KGTY+R++
Sbjct: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFI-RHEGNELELEIHCSKGTYIRTI 183

Query: 184 ARDLSLALGTVGHVSVLRRIACGPFNEQNAISLESLEDL------SQVPAPW---TFLLP 234
             DL   LG   HV  LRR+A   +  +  ++LE L +L        +PA       L+P
Sbjct: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243

Query: 235 IETALDDIPALALTESEARRLQSGNPVSIS 264
           +++   D P + L  + +   ++GNPV  S
Sbjct: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTS 273