Pairwise Alignments

Query, 308 a.a., site-specific tyrosine recombinase XerD from Magnetospirillum magneticum AMB-1

Subject, 298 a.a., tyrosine recombinase XerD from Pseudomonas simiae WCS417

 Score =  194 bits (492), Expect = 3e-54
 Identities = 121/291 (41%), Positives = 170/291 (58%), Gaps = 3/291 (1%)

Query: 9   IESFLEMMQVERGASPNTLDAYGRDLADFAEFLDGRGFSPLRADARAVAAYIARQAEIGM 68
           I+ FL+ + +E+G S NT  AY  DLA F  +L  +    + A    +  ++A + E   
Sbjct: 9   IDRFLDALWLEKGLSDNTRQAYRSDLALFNGWLQEKNLELVNAGRELILDHLAWRLEQNY 68

Query: 69  AARTQARRLSCLKQFYGFVFAERLRPDDPTANIDAPRLGRPLPKYLRREEVTALLDAARA 128
             R+ AR LS ++ FY ++  E+L   DPT  +D P+LGRPLPK L   +V ALL AA  
Sbjct: 69  KPRSTARFLSGVRGFYRYLLREKLIAVDPTLQVDMPQLGRPLPKSLSEADVEALL-AAPD 127

Query: 129 LEGSDGILMTALLETLYAAGLRVSELVSLPLSAVARDPSVLVVRGKGSKERMVPLSDPAR 188
           L  + G    A+LE LYA GLRV+EL+SL L  V     VL V GKGSKER+VP+ + A 
Sbjct: 128 LSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAI 187

Query: 189 AALLAWKVERQTLVPKSKPSRWLFPSSGALGHLTRSGFAKMLGRVAVLAGLDPAKVSPHV 248
             +  +  + ++ +   +PS  LFPS      +TR  F   +   A +AG+  A +SPH 
Sbjct: 188 VWVERYMRDARSELLGGRPSDVLFPSLRG-EQMTRQTFWHRIKHQAKVAGIGKA-LSPHT 245

Query: 249 LRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHLIDDEAGRLVRAHHP 299
           LRH+FA+HLL  GADLR VQ +LGH+D++TT+IYTH+       +   HHP
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDMHAKHHP 296