Pairwise Alignments

Query, 384 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

Subject, 563 a.a., methyl-accepting chemotaxis protein from Magnetospirillum magneticum AMB-1

 Score =  308 bits (790), Expect = 2e-88
 Identities = 177/364 (48%), Positives = 242/364 (66%), Gaps = 1/364 (0%)

Query: 17  VAGIGLIGAMASLIGKRTIAAPIDAMAAAMDKLRQRDYGVHIPGVGLTNEIGRMASSLAV 76
           +AG+ LI  + +L    +I  P+ AM  AMD L + D  V IP     +E+G MA+++ V
Sbjct: 199 IAGL-LIALVTALRTAASIVPPLVAMTGAMDSLSKGDTSVAIPAASTADEVGEMAAAMEV 257

Query: 77  FRDAMVETERLTAEHEAELTERVERGRAMDSLARDFDRTVSGVLEVVSGAATELHATAQG 136
           FR  ++    L  + +       +R   + SL   FD   S +++ V+ AA +L ATA  
Sbjct: 258 FRANLIHQRELEEKQKQADEAARQRALRIASLTTTFDNAASAMVQQVAAAAGQLQATAGA 317

Query: 137 MQTIAEQTQDKATAVAAAAEEASSSVETVATAAEELSASIAEIARQVAQSSTAAQQASDE 196
           M   A+QT  +AT+VAAA+EEAS +V+TVA AAEELS SI EI RQVA SS  +Q A  E
Sbjct: 318 MSATAQQTSHQATSVAAASEEASVNVQTVAAAAEELSGSINEIGRQVAHSSAISQDAVGE 377

Query: 197 ARQTNTIVQGLAASSTRIGDVVSLINDIAAQTNLLALNATIEAARAGEAGKGFAVVAGEV 256
           A +   +V  LA ++ +IG+VVSLI DIA+QTNLLALNATIEAARAGEAGKGFAVVA EV
Sbjct: 378 ATKAADVVNELADTAQKIGEVVSLITDIASQTNLLALNATIEAARAGEAGKGFAVVANEV 437

Query: 257 KALANQTGKATEEISTQVGAVQTATREAVAAIGSIVGRIEEINHIATAISAAVEEQSAAT 316
           K LANQT +AT++I  Q+ A+Q  T+  V  IG+IV  IEEI HI+  ++A+VEEQSAAT
Sbjct: 438 KNLANQTARATDDIGRQIAAIQDQTQRVVDTIGAIVKVIEEIGHISGDVAASVEEQSAAT 497

Query: 317 AEIARNVDQASQGTRQVSANVGGVSATAAETDAAAVQVLSAAQSLSREATELKDVVDRFL 376
            EIARNV+QA+ GT +VS NV  V   A +T  ++ +VL A+++L+ ++  L+  ++ FL
Sbjct: 498 QEIARNVEQAAAGTAEVSGNVVQVQDAADQTGTSSREVLEASRTLAEQSGNLRSTIEAFL 557

Query: 377 EGVR 380
           + VR
Sbjct: 558 KDVR 561



 Score = 45.1 bits (105), Expect = 5e-09
 Identities = 82/393 (20%), Positives = 141/393 (35%), Gaps = 43/393 (10%)

Query: 24  GAMASLIGKRTIAAPIDAMAAAMDKLRQRDYGVHIPGVGLTNEI-GRMASSLAVFRDAMV 82
           G + +LI    +   I   A  ++K   R  G+ +P    +  I G M +SLA  R  ++
Sbjct: 12  GILCTLIA--VVTGTIIFEALGVNKAADRMIGLRMPVAQTSAGIEGHMYASLAALRGYLL 69

Query: 83  ETERLTAEHEAELTERVERGRAMDSLARDFDR-----TVSGVLEVVSGAATELHATAQGM 137
             +      +A   ER E    +D L  D D+     T S   +    A T L    +  
Sbjct: 70  TGK------DAFKAERAEAWGDLDVLIADMDKLALRFTNSANQQAWKDARTLL-LELKAA 122

Query: 138 QTIAEQTQDKATAVAAAAEEASSSVETVATA-----AEELSASIAEIARQVAQSSTAAQQ 192
           Q  AE       A+     EA   V  + T      A +   S   I  Q     T A +
Sbjct: 123 QAKAEGLGQGEEAIKVLVTEAVPRVTRLVTVFSGEKAADGKRSGGMIDNQKRMLETDATE 182

Query: 193 ASDEARQTNTIVQG------LAASSTRIGDVVSLINDIAAQTNLL----------ALNAT 236
                    T+  G      L A  T +    S++  + A T  +          A+ A 
Sbjct: 183 VEGLVNTMITVAVGALIAGLLIALVTALRTAASIVPPLVAMTGAMDSLSKGDTSVAIPAA 242

Query: 237 IEAARAGEAGKGFAVVAG------EVKALANQTGKATEEISTQVGAVQTATREAVAA-IG 289
             A   GE      V         E++    Q  +A  + + ++ ++ T    A +A + 
Sbjct: 243 STADEVGEMAAAMEVFRANLIHQRELEEKQKQADEAARQRALRIASLTTTFDNAASAMVQ 302

Query: 290 SIVGRIEEINHIATAISAAVEEQSAATAEIARNVDQASQGTRQVSANVGGVSATAAETDA 349
            +     ++   A A+SA  ++ S     +A   ++AS   + V+A    +S +  E   
Sbjct: 303 QVAAAAGQLQATAGAMSATAQQTSHQATSVAAASEEASVNVQTVAAAAEELSGSINEIGR 362

Query: 350 AAVQVLSAAQSLSREATELKDVVDRFLEGVRTV 382
                 + +Q    EAT+  DVV+   +  + +
Sbjct: 363 QVAHSSAISQDAVGEATKAADVVNELADTAQKI 395