Pairwise Alignments

Query, 597 a.a., single-stranded-DNA-specific exonuclease RecJ from Magnetospirillum magneticum AMB-1

Subject, 565 a.a., single-stranded-DNA-specific exonuclease RecJ from Ralstonia solanacearum PSI07

 Score =  285 bits (728), Expect = 5e-81
 Identities = 217/576 (37%), Positives = 299/576 (51%), Gaps = 29/576 (5%)

Query: 29  RPGDERLAQALAQRLALPELVGRVLASRGIGLDEAESFLNPTLRDLLPDPGHLKGMDKAV 88
           RP     A  LA     P L  R+LA+RG+      S L+  L DLL  P  LKG+D A 
Sbjct: 7   RPHSAETASLLAGHGIHPVLA-RILAARGVA---RPSELSTELADLLA-PAQLKGIDDAA 61

Query: 89  ERLVAAVTRGETIGIFGDYDVDGATSSALLRNALADMGAKARVYIPDRIKEGYGPNAPAL 148
             L  A+  G+ + I  DYD DGAT+ A+    L  +GA+    +P+R + GYG +   +
Sbjct: 62  RYLADAIAAGKRLLIVADYDCDGATACAVGVRGLRMLGAQVGYIVPNRFEYGYGLSPEIV 121

Query: 149 LRLRDEGVAVVVTVDCGTTAFDALETATRAGLDMIVVDHHVGEAALPAALAVINPNRLDE 208
                E   V+VTVD G      +  A   G+D++V DHH+  A LP A  ++NPN+   
Sbjct: 122 ALAAREKPDVLVTVDNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPGC 181

Query: 209 TSPHGHLAAVGVAFLLAVGLNRGLKAAGWYQSRPAPDLMRWLDLVALGTVCDVVPLVGVN 268
             P  HLA VGV F + + L   L+  G +  +  P L   LDLVALGTV DVV L   N
Sbjct: 182 GFPSKHLAGVGVMFYVLLALRAELRNRGAFTLQNQPRLDALLDLVALGTVADVVRLDANN 241

Query: 269 RALVVQGLKVM-AKRANVGLAALADVAGVK-ERPDSYTLGYVLGPRVNAGGRVGEAELGT 326
           R LV QGLK M A R   G+AAL  V+G +  R  ++ LG+ LGPR+NA GR+ +  LG 
Sbjct: 242 RVLVAQGLKRMRAGRMCAGIAALFRVSGREARRASTFDLGFGLGPRLNAAGRLADMSLGI 301

Query: 327 RLMSTDNPAEAAEIARQLDGYNKDRQEIEAVVLLDAIEQVET----RPDDGRPLLVAAGE 382
             + TD+   A  IA +LDG N++R+EIEA +  +A+  + +        G   +    E
Sbjct: 302 ECLLTDDFDRAMAIAAELDGMNRERREIEAGMQQEAMAILSSTLVGMEGSGSHTIAVYNE 361

Query: 383 NWHPGVIGIVAGRLKERYGRVACVVALEGDQG--KGSGRSVPGLDLGSAIIAA--RQAGL 438
            WH GVIGIVA RLK+++ R     A  GD G  KGSGRS+PG  L  A+ A   R  GL
Sbjct: 362 TWHQGVIGIVASRLKDKFHRPVITFA-PGDDGVIKGSGRSIPGFHLRDALDAVHKRCPGL 420

Query: 439 LRAGGGHAMAAGFTVARDKLTA-LSDFLAERLQAQLEGDLVPLLELDGALDAGAAGIELV 497
           +   GGHAMAAG ++  D     +  F A   +   E  L  +LE DG  D      + V
Sbjct: 421 IVKFGGHAMAAGLSLRADGFAPFVETFEAVGREWLNEALLSRVLETDGEADPECFTPQFV 480

Query: 498 ETLAGVGPFGSGNPEPRFAISGARIAKADVVGSGHVRLILTGAGGKRLKAIAFRAADSEM 557
           E L     +G G P P F      +++A V+   H++L L G G +R  AI F  A+   
Sbjct: 481 ELLE-THVWGQGFPAPSFCGEFDVLSQA-VLKEKHLKLQL-GRGKQRFDAIWFNHAE--- 534

Query: 558 GHALLSSAGASFHLAGTLRVDTWQGNSSVQLIVDDA 593
                   GAS ++A  L  +T+ G + VQ++++ A
Sbjct: 535 ------PLGASAYVAYRLDNNTFNGITRVQMVIEHA 564