Pairwise Alignments

Query, 597 a.a., single-stranded-DNA-specific exonuclease RecJ from Magnetospirillum magneticum AMB-1

Subject, 569 a.a., ssDNA-specific exonuclease RecJ from Pseudomonas putida KT2440

 Score =  304 bits (779), Expect = 6e-87
 Identities = 213/555 (38%), Positives = 315/555 (56%), Gaps = 18/555 (3%)

Query: 45  LPELVGRVLASRGIGLDEAESFLNPTLRDLLPDPGHLKGMDKAVERLVAAVTRGETIGIF 104
           LP L+ R+ A+RG+   ++E+ L+ +L  LLP    LKG++  V+ LV A+ + + I I 
Sbjct: 18  LPPLLTRLYAARGV---QSEAELDKSLARLLPYQ-QLKGIEAGVDLLVEAIDQRQRILIV 73

Query: 105 GDYDVDGATSSALLRNALADMGAKARVY-IPDRIKEGYGPNAPALLRLRDEGVAVVVTVD 163
           GD+D DGAT+S +    L  +GA    Y +P+R + GYG     +         +++TVD
Sbjct: 74  GDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQRQPQLLITVD 133

Query: 164 CGTTAFDALETATRAGLDMIVVDHHVGEAALPAALAVINPNRLDETSPHGHLAAVGVAFL 223
            G ++ D +  A  AGL ++V DHH+    LP A A+INPN+   + P   LA VGV F 
Sbjct: 134 NGISSVDGVAAAKAAGLKVLVTDHHLPGEQLPDADAIINPNQPGCSFPSKSLAGVGVIFY 193

Query: 224 LAVGLNRGLKAAGWYQSRPAPDLMRWLDLVALGTVCDVVPLVGVNRALVVQGL-KVMAKR 282
           + + L   L++ G Y+++P P++   LDLVALG+V DVVPL   NR LV QGL ++ A R
Sbjct: 194 VLMALRARLRSLGRYEAQPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGR 253

Query: 283 ANVGLAALADVAGVKERPDSYT-LGYVLGPRVNAGGRVGEAELGTRLMSTDNPAEAAEIA 341
           A  GL A+ +VA    R  + T LG++LGPR+NA GR+ +  LG   +  ++ A A ++A
Sbjct: 254 ARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDAALAQDMA 313

Query: 342 RQLDGYNKDRQEIEAVVLLDAIEQVETRPDDGRPL-LVAAGENWHPGVIGIVAGRLKERY 400
           +QLD  N+DR+ IE  +  +A+ Q++  P +  P  L     +WH GVIGI+A RLKERY
Sbjct: 314 QQLDDLNQDRKSIEQGMQREALAQLKDLPVESMPYGLCLFDADWHQGVIGILASRLKERY 373

Query: 401 GRVACVVALEGD-QGKGSGRSVPGLDLGSAI--IAARQAGLLRAGGGHAMAAGFTVARDK 457
            R     A  GD   KGS RSVPG  +  A+  +AAR   L+   GGHAMAAG ++    
Sbjct: 374 HRPTIAFADAGDGMLKGSARSVPGFHIRDALDAVAARHPQLISKFGGHAMAAGLSLPEAN 433

Query: 458 LTALSDFLAERLQAQL-EGDLVPLLELDGALDAGAAGIELVETLAGVGPFGSGNPEPRFA 516
            +A ++   E ++ QL E DL   L  DG+L      ++L + L   GP+G   PEP F 
Sbjct: 434 FSAFAEAFDEEVRRQLREEDLTGRLLSDGSLAVEEFHLDLAKALRHAGPWGQHFPEPLFH 493

Query: 517 ISGARIAKADVVGSGHVRLIL-TGAGGKRLKAIAFRAADSEMGHALLSSAGASFHLAGTL 575
               ++ +  VVG  H++++L +  G  RL  IAF   D E+     +       LA  L
Sbjct: 494 -GVFQLVEQRVVGERHLKVVLKSECGSVRLDGIAF-GIDREVWP---NPTVRWVELAYKL 548

Query: 576 RVDTWQGNSSVQLIV 590
            V+ ++GN SVQL++
Sbjct: 549 DVNEFRGNESVQLMI 563