Pairwise Alignments

Query, 597 a.a., single-stranded-DNA-specific exonuclease RecJ from Magnetospirillum magneticum AMB-1

Subject, 569 a.a., Single-stranded-DNA-specific exonuclease RecJ from Pseudomonas sp. DMC3

 Score =  302 bits (774), Expect = 2e-86
 Identities = 207/555 (37%), Positives = 310/555 (55%), Gaps = 18/555 (3%)

Query: 45  LPELVGRVLASRGIGLDEAESFLNPTLRDLLPDPGHLKGMDKAVERLVAAVTRGETIGIF 104
           LP L+ R+ A+RG+   ++E+ L+ +L  L+P    LKG+D AV+ LV A+ + + I I 
Sbjct: 18  LPPLLTRLYAARGV---QSEAELDKSLARLIPFQ-QLKGIDAAVDLLVTALEQRQRILIV 73

Query: 105 GDYDVDGATSSALLRNALADMGAKARVY-IPDRIKEGYGPNAPALLRLRDEGVAVVVTVD 163
           GD+D DGAT+S +    L  +GA    Y +P+R + GYG     +         +++TVD
Sbjct: 74  GDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALTREPQLLITVD 133

Query: 164 CGTTAFDALETATRAGLDMIVVDHHVGEAALPAALAVINPNRLDETSPHGHLAAVGVAFL 223
            G ++ + +  A RAGL +++ DHH+    LP A A++NPN+     P   LA VGV F 
Sbjct: 134 NGISSVEGVAAAKRAGLKVLITDHHLPGDELPQADALVNPNQPGCEFPSKALAGVGVIFY 193

Query: 224 LAVGLNRGLKAAGWYQSRPAPDLMRWLDLVALGTVCDVVPLVGVNRALVVQGL-KVMAKR 282
           + + L   L++ GWY+S+P P++   LDLVALG+V DVVPL   NR LV QGL ++ A R
Sbjct: 194 VLMALRARLRSLGWYESKPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGR 253

Query: 283 ANVGLAALADVAGVK-ERPDSYTLGYVLGPRVNAGGRVGEAELGTRLMSTDNPAEAAEIA 341
           A  G+ A+ +VA  +  R  S  LG+++GPR+NA GR+ +  LG   + T +   A E+A
Sbjct: 254 ARPGIKAILEVAKREAARITSTDLGFIVGPRLNAAGRLDDMSLGIECLLTADANLAREMA 313

Query: 342 RQLDGYNKDRQEIEAVVLLDAIEQVETRPDDGRPL-LVAAGENWHPGVIGIVAGRLKERY 400
            QLDG N+DR+ IE  +  +A+ Q++  P +  P  L      WH GVIGI+A R+KERY
Sbjct: 314 AQLDGMNQDRKSIEQGMQREALAQLKDLPVESMPFGLCLFDPEWHQGVIGILASRMKERY 373

Query: 401 GRVACVVALEGD-QGKGSGRSVPGLDLGSA--IIAARQAGLLRAGGGHAMAAGFTVARDK 457
            R     A  GD   KGSGRSV G  +  A  ++AA+   L+   GGHAMAAG T+ ++ 
Sbjct: 374 FRPTIAFADAGDGLLKGSGRSVQGFHIRDALSVVAAQHPNLIAKYGGHAMAAGLTLPQEN 433

Query: 458 LTALSDFLAERLQAQL-EGDLVPLLELDGALDAGAAGIELVETLAGVGPFGSGNPEPRFA 516
               ++     ++ QL E DL   +  DG L      +EL   L   GP+G   PEP F 
Sbjct: 434 FPLFAEAFDAEVRRQLREEDLTGRMLSDGTLAVEEFHLELARALRHAGPWGQHFPEPLFH 493

Query: 517 ISGARIAKADVVGSGHVRLIL-TGAGGKRLKAIAFRAADSEMGHALLSSAGASFHLAGTL 575
               ++ +  VVG  H++++L +  G  +L  IAF        +  +        LA  L
Sbjct: 494 -GVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGIDRDVWPNPTIQWV----ELAYKL 548

Query: 576 RVDTWQGNSSVQLIV 590
            V+ ++GN +VQL++
Sbjct: 549 DVNEFRGNETVQLMI 563