Pairwise Alignments

Query, 597 a.a., single-stranded-DNA-specific exonuclease RecJ from Magnetospirillum magneticum AMB-1

Subject, 560 a.a., Single-stranded-DNA-specific exonuclease RecJ from Methylophilus sp. DMC18

 Score =  253 bits (646), Expect = 1e-71
 Identities = 193/566 (34%), Positives = 287/566 (50%), Gaps = 43/566 (7%)

Query: 41  QRLALPELVGRVLASRGI-----GLDEAESFLNPTLRDLLPDPGHLKGMDKAVERLVAAV 95
           Q   LP L+ R+LA+RG+     GL +    L P           L G  +   +L  A+
Sbjct: 17  QAQGLPPLMARLLAARGVTSADWGLQDMPHLLKPEA---------LTGAAEMARQLADAI 67

Query: 96  TRGETIGIFGDYDVDGATSSALLRNALADMGAKARVYIPDRIKEGYG--PNAPALLRLRD 153
            + + I I GDYD DGAT++++    L  MGA+    +P+R + GYG  P   AL   R 
Sbjct: 68  AQQQRILIIGDYDADGATATSVAMRGLRMMGAEVDFLVPNRFEYGYGLTPEIVALAATRQ 127

Query: 154 EGVAVVVTVDCGTTAFDALETATRAGLDMIVVDHHVGEAALPAALAVINPNRLDETSPHG 213
               V++TVD G  + + +  A   GL +++ DHH+     PAA  ++NPN+     P  
Sbjct: 128 P--QVLLTVDNGIASIEGVAAAKALGLRVLITDHHLPAEQTPAADCIVNPNQRGCGFPSK 185

Query: 214 HLAAVGVAFLLAVGLNRGLKAAGWYQSRPAPDLMRWLDLVALGTVCDVVPLVGVNRALVV 273
           HLA VGV F + + L   LK  G   +     L R LDLVALGTV D+V L   NR LV 
Sbjct: 186 HLAGVGVMFYVLIALRAELKQRG-QLAEDQVHLGRLLDLVALGTVADLVRLDANNRILVR 244

Query: 274 QGLK-VMAKRANVGLAALADVAG-VKERPDSYTLGYVLGPRVNAGGRVGEAELGTRLMST 331
           QGLK +   +A  G+ A+  +AG   ++  +  LG+ +GPR+NA GR+ +  +G R +  
Sbjct: 245 QGLKRIRQGQACPGIQAILKLAGRDPQQVSAQDLGFYVGPRLNAAGRLDDMTIGIRCLLA 304

Query: 332 DNPAEAAEIARQLDGYNKDRQEIEAVVLLDAIEQVETRPDDGRP---LLVAAGENWHPGV 388
           D P EA + A+QL   N +R++IEA +  DA+  +     D RP    +     +WH GV
Sbjct: 305 DTPQEAMQYAQQLHRLNAERKQIEAEMQFDAMADLN---QDFRPEQYTISVFQPDWHQGV 361

Query: 389 IGIVAGRLKERYGRVACVVALEGD-QGKGSGRSVPGLDLGSA--IIAARQAGLLRAGGGH 445
           IGI+A R+KER+ R   V A  GD   KGSGRS+ GL L  A  ++  +Q  L+   GGH
Sbjct: 362 IGILASRIKERFHRPVIVFADAGDGLIKGSGRSIAGLHLRDALDLVTKQQPDLIVKFGGH 421

Query: 446 AMAAGFTVARDKLTALSDFLAERLQAQLEGD-LVPLLELDGALDAGAAGIELVETLAGVG 504
           AMAAG +V  +  +       + +Q+ +  + L  +LE DG L      ++  E L    
Sbjct: 422 AMAAGLSVRAEDFSRFQQAFEQVVQSLISAEVLQEMLETDGGLAPNEMSLQTAELLT-QH 480

Query: 505 PFGSGNPEPRFAISGARIAKADVVGSGHVRLILTGAGGKRLKAIAFRAADSEMGHALLSS 564
            +G G P+P F      +    ++   H++L L     ++  AI F+ A+          
Sbjct: 481 VWGQGFPQPVF-YDQFDVLSQKLLAEKHLKLRLQ-KHNQQFDAIYFQHAE---------P 529

Query: 565 AGASFHLAGTLRVDTWQGNSSVQLIV 590
                 LA +L+V+ + G+ SVQL V
Sbjct: 530 LPEQVALAYSLQVNEYNGHRSVQLQV 555