Pairwise Alignments

Query, 597 a.a., single-stranded-DNA-specific exonuclease RecJ from Magnetospirillum magneticum AMB-1

Subject, 577 a.a., single-stranded-DNA-specific exonuclease RecJ from Escherichia coli ECRC101

 Score =  292 bits (747), Expect = 3e-83
 Identities = 205/562 (36%), Positives = 302/562 (53%), Gaps = 24/562 (4%)

Query: 45  LPELVGRVLASRGIGLDEAESFLNPTLRDLLPDPGHLKGMDKAVERLVAAVTRGETIGIF 104
           LP L+ R+ ASRG+    +   L  +++ +LP    L G++KAVE L  A   G  I + 
Sbjct: 22  LPPLLRRLYASRGV---RSAQELERSVKGMLPWQ-QLSGVEKAVEILYNAFREGTRIIVV 77

Query: 105 GDYDVDGATSSALLRNALADMGAKARVY-IPDRIKEGYGPNAPALLRLRDEGVAVVVTVD 163
           GD+D DGATS+AL   A+  +G     Y +P+R ++GYG +   + +    G  ++VTVD
Sbjct: 78  GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137

Query: 164 CGTTAFDALETATRAGLDMIVVDHHVGEAALPAALAVINPNRLDETSPHGHLAAVGVAFL 223
            G ++   +E A   G+ +IV DHH+    LPAA A+INPN  D   P   LA VGVAF 
Sbjct: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197

Query: 224 LAVGLNRGLKAAGWYQSR--PAPDLMRWLDLVALGTVCDVVPLVGVNRALVVQGL-KVMA 280
           L + L   L+  GW+  R    P+L   LDLVALGTV DVVPL   NR L  QG+ ++ A
Sbjct: 198 LMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257

Query: 281 KRANVGLAALADVAG-VKERPDSYTLGYVLGPRVNAGGRVGEAELGTRLMSTDNPAEAAE 339
            +   G+ AL +VA    ++  +  LG+ LGPR+NA GR+ +  +G  L+  DN  EA  
Sbjct: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317

Query: 340 IARQLDGYNKDRQEIEAVVLLDAI---EQVETRPDDGRPLLVAAGENWHPGVIGIVAGRL 396
           +A +LD  N+ R+EIE  + ++A+   E++E   D     L      WH GV+GI+A R+
Sbjct: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377

Query: 397 KERYGRVACVVALEGDQG-KGSGRSVPGLDLGSAI--IAARQAGLLRAGGGHAMAAGFTV 453
           KER+ R     A  GD   KGSGRS+ GL +  A+  +     G++   GGHAMAAG ++
Sbjct: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437

Query: 454 ARDKLTALSDFLAERLQAQLEGDLVP-LLELDGALDAGAAGIELVETLAGVGPFGSGNPE 512
             DK         E +   L+  L+   +  DG L      +E+ + L   GP+G   PE
Sbjct: 438 EEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497

Query: 513 PRFAISGARIAKADVVGSGHVRLILTG-AGGKRLKAIAFRAADSEMGHALLSSAGA-SFH 570
           P F     R+ +  +VG  H+++++    GG  L  IAF      +  AL    G     
Sbjct: 498 PLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF-----NVDTALWPDNGVREVQ 551

Query: 571 LAGTLRVDTWQGNSSVQLIVDD 592
           LA  L ++ ++GN S+Q+I+D+
Sbjct: 552 LAYKLDINEFRGNRSLQIIIDN 573