Pairwise Alignments

Query, 681 a.a., PAS domain-containing sensor histidine kinase from Magnetospirillum magneticum AMB-1

Subject, 863 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  238 bits (606), Expect = 1e-66
 Identities = 154/386 (39%), Positives = 205/386 (53%), Gaps = 31/386 (8%)

Query: 316 LVALRASEERYRGLIETQNDL-------VVRLTPDDRLVFVNEAFARSHGLDAAQAVGRS 368
           + A RA+E   R L+  +  +       +V    D  ++  N    R  G  A + VGR 
Sbjct: 475 VTARRAAEREVRSLLAFRRAVLDGAGSSIVATAVDGTILLFNPTAERWLGYGAEEVVGRM 534

Query: 369 WRTFVHEEDQPAT-----AQALATALSP--PAFRATV---------ECRMTMTCGLRW-V 411
                H+ ++ +      +Q L   + P    F A V         E       G R+ V
Sbjct: 535 TPAAFHDSEEVSQRVARLSQELGREVEPGFECFIAKVLDSGKPDSGEWTYVRKDGSRFRV 594

Query: 412 SWEGAAIRDMSGNIVEIQAAGRDITEWVEHRDRQAELLRNLDKSNRELEQFAYVASHDLR 471
                A+ D  G +       +DI+        +  + + L +SN ELE FAYVASHDLR
Sbjct: 595 LLTVTALYDEEGVLSGFLGVAQDISA-------RLSIEKELKRSNAELENFAYVASHDLR 647

Query: 472 EPLRMISSYLGLLGRRYTALLDEDGRQFMEFARDGAKRMDQMVLDLLEFSRVGRLRDGLG 531
           +PLRMISSY+ LL RR    LD+D + F+ FA  GA+RMD M+ DLL++SR+GR      
Sbjct: 648 QPLRMISSYIALLQRRLGDALDQDCQDFIGFAVGGAQRMDHMITDLLQYSRLGRSGTPPA 707

Query: 532 TVSLGEAASIAILNLALPIKESGGTVTVAPDLPEITGARGEMIRLMQNLIGNAVKYRQPG 591
            V+L E   +A  NL   I+E+G  VTVA  LP + G   E+ RL QNLI NAVK++  G
Sbjct: 708 AVNLAEVVKLAQANLGALIEETGAAVTVAEGLPTVRGNEVELERLFQNLISNAVKFQAQG 767

Query: 592 RPLTVTVSAERNHDGWTLTVADNGIGIPPDGFERIFDIFQRLHSRADYEGTGIGLAVCRK 651
           R   V ++     D W ++V DNGIGI   G +++F IFQRL     Y G+GIGLA CRK
Sbjct: 768 RLPLVEITWRATADEWIISVRDNGIGIDEAGRQKLFQIFQRLVRLDQYPGSGIGLASCRK 827

Query: 652 IVEHHGGRIWVESVPGEGSRFRFTLP 677
           I EHHGGRIWVES PGEGS F+  LP
Sbjct: 828 IAEHHGGRIWVESQPGEGSTFQVALP 853



 Score = 30.4 bits (67), Expect = 4e-04
 Identities = 83/354 (23%), Positives = 122/354 (34%), Gaps = 71/354 (20%)

Query: 62  QVRGSLRVVRLMLRAIAEAPRDDTNALRRFMATRTRIVPEIRQAFIV-NADGIVTIATLP 120
           Q+    RV  L+LR      R D  AL+ F+  RT I        +V  ADG V +A  P
Sbjct: 63  QIEAMERVAPLVLRV----DRGDGGALKAFIEDRTGIKGFFAGGLLVLGADGRV-LAETP 117

Query: 121 QVEGRDTSERSFFRNARELPPARDLFVSEPLPIGQNNSLVIMVSMPLSGPDGQFDGIVAV 180
            +                L   R L VSEP      N   + +++P+   +     +V +
Sbjct: 118 NLGRLGKGMADEIGVGSVLASGRSL-VSEPYFDHALNQPAVAMAVPIRRGEAVVGALVGI 176

Query: 181 SLELGYFQTLLQSVHSGE-------EGAGALLVTPEGDIIDRDPEPELYVGKNIAKGGAF 233
           +       TL QS   G        E  G  +V+P+  +I      E        +G   
Sbjct: 177 A-------TLTQSNLLGRLVEQKVGESGGLYMVSPKSGLIVVSTNKERIFTPVPRRGQNH 229

Query: 234 SMHRKAGGTANTFVHVTATDGKEKVSAVRSLS---------------EP----------- 267
            + R   G   + V V++   +E  SA R  S               EP           
Sbjct: 230 MLDRYMDGFEGSGVTVSSAGLEELTSARRIASTGWVLVARLPTAEAFEPVADIKTRLFAA 289

Query: 268 ------------------ALPPLVVIVGR---PLDGVLAPWRAEALTMAAVVGTLVIAIL 306
                             AL PL    GR    +DG  AP+ A  ++    VG ++ A  
Sbjct: 290 LAGLGLTSLGLLWLVLRSALSPLHRATGRIQAMVDGN-APFEAVEISRGDEVGRMIGAFN 348

Query: 307 GLTALLNRHLVALRASEERYRGLIE--TQNDLVVRLTPDDRLVFVNEAFARSHG 358
            L A +    VALR  E  Y  L       +L++    D R++  N A    +G
Sbjct: 349 ALQAKVAAADVALREREGLYHALFRGCKAVELLIDPAEDGRIIDANRAAEAYYG 402